PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 32451.5 Da PI: 7.3156 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 138 | 192 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k XP_004493598.1 138 RKKLRLSKDQSAFLEDTFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 192 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.5 | 1.1e-40 | 138 | 228 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LE++F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_004493598.1 138 RKKLRLSKDQSAFLEDTFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELR-ALK 228 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 113 | 195 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.97E-18 | 128 | 195 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 134 | 194 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 136 | 198 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.5E-15 | 138 | 192 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.07E-15 | 138 | 195 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 169 | 192 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00839 | 187 | 226 | No hit | No description |
SMART | SM00340 | 7.5E-26 | 194 | 237 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.9E-11 | 194 | 228 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MELALSLGDT PKPFSLFENP TKLPNKDSCI QLEEAAKSSN QNRGSSDSPI QLDLLPSTPV 60 LRSHPSPLVP IPWLNDALGM EPARVLDNDE GESPNSGVSC FQMEFCMMNG AGRNSSREGG 120 ADRNSTSDDD EEENGSTRKK LRLSKDQSAF LEDTFKEHTT LNPKQKLALA KQLNLRPRQV 180 EVWFQNRRAR TKLKQTEVDC EYLKRCCESL TEENRRLQKE LQELRALKTS KPFYMQLPAT 240 TLTMCPSCER VATNTTGTAL TNNNNASQLS LRKPTIFSLP NGQAHTQQAH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | TRKKLRL |
2 | 186 | 194 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493598.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493598.1 | 0.0 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 3e-82 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1S2XT66 | 0.0 | A0A1S2XT66_CICAR; homeobox-leucine zipper protein HOX11 | ||||
STRING | XP_004493598.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-69 | homeobox from Arabidopsis thaliana |