PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 292aa MW: 31037.1 Da PI: 9.606 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.5e-07 | 35 | 58 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_004493580.1 35 KSKPCTKFFSTSGCPFGESCHFLH 58 7789******************** PP | |||||||
2 | zf-CCCH | 25.8 | 1.8e-08 | 100 | 125 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ XP_004493580.1 100 KSRICNKFNTAEGCKFGDKCHFAHGE 125 6799********************96 PP | |||||||
3 | zf-CCCH | 34 | 5e-11 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +GdrC+FaHg XP_004493580.1 262 FKTKLCENFTK-GSCTFGDRCHFAHG 286 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.709 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-5 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-8 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-13 | 96 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-7 | 97 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0071 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.14E-15 | 157 | 239 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.8E-16 | 166 | 235 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.7E-12 | 166 | 236 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.802 | 167 | 231 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.53E-15 | 169 | 232 | No hit | No description |
Pfam | PF00013 | 7.9E-12 | 169 | 232 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-15 | 257 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-8 | 261 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.427 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDMRKRGRSE HGFNNGGFKK SRQEMDSLST GVGSKSKPCT KFFSTSGCPF GESCHFLHYV 60 PGGYNAVAQM MNLAPAAPPA PRNVAPPPHA PNGSAPSAVK SRICNKFNTA EGCKFGDKCH 120 FAHGEWELGK PVAPSFDDHR PMGPPNVGRF GGRMEPPPGP AASFGANATA KISVEASLAG 180 AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGN FEQIKDASNM VKDLLVTLQM 240 SAPPKSNQGA PGAPGHHHGS NFKTKLCENF TKGSCTFGDR CHFAHGAAEL RK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493580.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-113 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S2XRV3 | 0.0 | A0A1S2XRV3_CICAR; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | XP_004493580.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-87 | C3H family protein |