PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 388aa MW: 43993.2 Da PI: 6.8427 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 9.1e-32 | 213 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fv++v+ LGG+ekAtPk++l++m+ +gLt++hvkSHLQkYR+ XP_004493572.1 213 KTRIRWTKDLHEKFVKCVNLLGGAEKATPKAVLKMMDSDGLTIYHVKSHLQKYRI 267 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.972 | 210 | 270 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-16 | 211 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 211 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-22 | 213 | 268 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-9 | 217 | 266 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.8E-20 | 297 | 344 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MSQVWNLGTC SQQQKLSIVG EEESKSSNTS TIMSRFESPT SAFYATENYM GFAEFDNQSL 60 SSQLYKINDF DFPLYQSLRE NNHFLDSSNQ HDPNFELSNT LQALVKSQLN GNQCLRFQEK 120 SNKFSCENFP GSKFIPIEQQ KLFLGGLASV GSSSSFCNKG NQSYMDACGS YDLSVEQLNF 180 SSHHEKLSQT ISSESLSTSL GNPSSNENVV SSKTRIRWTK DLHEKFVKCV NLLGGAEKAT 240 PKAVLKMMDS DGLTIYHVKS HLQKYRIAKF MPESTQGKSD KRVRTEDMDH IGVKTGFQIK 300 EALQLQLDAQ RRLHEQLEIQ RTLQLRIEEQ GRELKKMFEQ QQKTCNNLFK TPNKVNDDTK 360 INHLEDVEVS ICEGAENSLF TSKTSLNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-23 | 213 | 270 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493572.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493572.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
TrEMBL | A0A1S2XRU8 | 0.0 | A0A1S2XRU8_CICAR; protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
STRING | XP_004493572.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-59 | G2-like family protein |