PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493549.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 303aa    MW: 34476.3 Da    PI: 9.2584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12236280755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +Er RR ri +++ +L+el+P+     +k  s +++L +AveYI++Lq
  XP_004493549.1 236 VAERVRRTRISDRMRKLQELVPNI----DKQTSTSDMLDLAVEYINDLQ 280
                     68*********************5....578*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.653229279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15232295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-11233284No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13234293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9236280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDLNSRYQHN QPNSGLLRFR SNFKQPKAAA ANDEPDSLLL RFTNTANTSS TFPEFFPHNK  60
GHNDPSSLSL LHTNSHQGYT TSSASHFSNF ISFRNAYDTM KGVENYDEVN DSDGELTLSM  120
NILNNQIGFS PKSPSSLRML SQNSKMGNVG IATISRDDRR QQDGNDDAQY YGHKFVYDSN  180
DQNVELGNQI DTLSHNLSLQ RKSSEMFVVE NLLQFPDSVP SSIRAKRGFA THPRSVAERV  240
RRTRISDRMR KLQELVPNID KQTSTSDMLD LAVEYINDLQ KELKTASEKR AKCRCIRMKM  300
HKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1411141e-76AC141114.14 Medicago truncatula clone mth2-8g20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493549.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A1S2XTU70.0A0A1S2XTU7_CICAR; transcription factor bHLH130-like isoform X1
STRINGXP_004493549.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-46bHLH family protein