PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004493546.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 367aa MW: 40345.2 Da PI: 5.9673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004493546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.5e-08	211	258	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++ Lq XP_004493546.1 211 SHSLAERARREKINARMKLLQELVPGC----DKISGTALVLDEIINHVQTLQ 258 8*************************9....677888999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-15	205	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-8	205	262	No hit	No description
PROSITE profile	PS50888	14.246	207	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-14	208	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-6	211	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-7	213	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MEQATVGLHG SIHDGTVLDS VQFDEEIQGI MVPAPAPENA SSFTALLELP PTQAVELLHL 60 PDCDGTASRR LPCCHVGVNQ KPYLPNSSNG NLTLTFPTNA ALIERAAKFS VFAGENSLGE 120 ARLFSVGSGA NLESVKNEPQ ETDSNPCSTQ ECVSDPAVEN KNQRTAKRKE PEKKAKGSAK 180 KSKSVXXXXX GDGEKLPYVH VRVRRGQATD SHSLAERARR EKINARMKLL QELVPGCDKI 240 SGTALVLDEI INHVQTLQRQ VEILSMKLAA VNPRIDFNID RLLAADGSSL MDINLPSMVS 300 PLVWPEIPLN SNRQQYQQHC QFDAFHQPLW GREEDNHNFM TPENSLLSYD SSANSASLHS 360 NQLKMEL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MEQATVGLHG SIHDGTVLDS VQFDEEIQGI MVPAPAPENA SSFTALLELP PTQAVELLHL  60
PDCDGTASRR LPCCHVGVNQ KPYLPNSSNG NLTLTFPTNA ALIERAAKFS VFAGENSLGE  120
ARLFSVGSGA NLESVKNEPQ ETDSNPCSTQ ECVSDPAVEN KNQRTAKRKE PEKKAKGSAK  180
KSKSVXXXXX GDGEKLPYVH VRVRRGQATD SHSLAERARR EKINARMKLL QELVPGCDKI  240
SGTALVLDEI INHVQTLQRQ VEILSMKLAA VNPRIDFNID RLLAADGSSL MDINLPSMVS  300
PLVWPEIPLN SNRQQYQQHC QFDAFHQPLW GREEDNHNFM TPENSLLSYD SSANSASLHS  360
NQLKMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004493546.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493546.1	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	2e-95	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1S2XRT5	0.0	A0A1S2XRT5_CICAR; transcription factor bHLH48
STRING	XP_004493546.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-103	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]