PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004493528.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 349aa MW: 39614.8 Da PI: 6.5012

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004493528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00046	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ XP_004493528.1 275 FMCRKCSKAFAVRGDWRTHEKNC 297 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.58	191	213	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.1E-6	191	210	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	191	218	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	238	270	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.79E-6	257	295	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-5	262	295	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	73	275	295	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MADHPYSNNL FSSSSFFHFP SSNPSSPFQF HHHHNNNNNN NNSTFFHYHH ISSSPPSPPL 60 REELPLLSLI TAKQEEYEEL SSCTPMDLEQ RVINLSKEEE EEEEEEEEND ITTTSSSSNS 120 VTVALHIGLP NPSAAEMASV LSSNSSSEIT DKQQHGGDAE DSSSGFMLNR INKGQYWIPT 180 PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT GMLRLPCYCC 240 AQGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC SKAFAVRGDW RTHEKNCGKL 300 WYCICGSDFK HKRSLKDHIK AFGNGHAAYG FDGFEEEDEP ASEVEQDNE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MADHPYSNNL FSSSSFFHFP SSNPSSPFQF HHHHNNNNNN NNSTFFHYHH ISSSPPSPPL  60
REELPLLSLI TAKQEEYEEL SSCTPMDLEQ RVINLSKEEE EEEEEEEEND ITTTSSSSNS  120
VTVALHIGLP NPSAAEMASV LSSNSSSEIT DKQQHGGDAE DSSSGFMLNR INKGQYWIPT  180
PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT GMLRLPCYCC  240
AQGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC SKAFAVRGDW RTHEKNCGKL  300
WYCICGSDFK HKRSLKDHIK AFGNGHAAYG FDGFEEEDEP ASEVEQDNE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004493528.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC143341	0.0	AC143341.8 Medicago truncatula clone mth2-7a11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493528.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-140	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S2XRS4	0.0	A0A1S2XRS4_CICAR; zinc finger protein WIP2
STRING	XP_004493528.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-137	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]