PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493523.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 289aa    MW: 32476.2 Da    PI: 6.5167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-203079255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  XP_004493523.1 30 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 79
                    69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.38E-322989No hitNo description
PfamPF008472.6E-133079IPR001471AP2/ERF domain
SMARTSM003801.7E-383093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-303088IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-213088IPR016177DNA-binding domain
PROSITE profilePS5103222.7483087IPR001471AP2/ERF domain
PRINTSPR003672.3E-103142IPR001471AP2/ERF domain
PRINTSPR003672.3E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMDNCKKSPL KPWKKGPTRG KGGPQNASCE YRGVRQRTWG KWVAEIREPK KRTRLWLGSF  60
ATAEEAAMAY DEAARRLYGP DAYLNLPHLQ PHSNSRIKTG KFKWLPSKNF ISMFPSCGLL  120
NVNAQPSVHL IHQRLQEFKQ NAVATSQSSL SSSSNDPKAE EIQNVDGKKN HAENPIMEKD  180
TQASSPNKMV GDFQEKPQID LHEFLQQMGI LKDDTNSEQT TDSSGSSTVH EAVSRDENDQ  240
LGIFSDMSIN WEALIEMHGI AGTQESEATQ LDGYDLTDQL NFSTSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493523.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493523.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX53e-89DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1S2XRS00.0A0A1S2XRS0_CICAR; dehydration-responsive element-binding protein 2F
STRINGXP_004493523.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.17e-79ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]