PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 727aa MW: 79823.1 Da PI: 6.6551 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_004493518.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 3.0E-13 | 38 | 184 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1600 | 40 | 70 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 2.8E-12 | 41 | 175 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.93E-9 | 45 | 176 | No hit | No description |
PROSITE profile | PS50297 | 11.426 | 87 | 176 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.059 | 87 | 115 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 660 | 122 | 154 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 305 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 334 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 43 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MCCELEGLKP APSPSLSPIL TRTSQLSNHT MNHLTVGTED SFASLLELAA NNDVEGFKRL 60 IEYDPSSVDE VGLWYGRRKG SKKMVNEQRT PLMVAATYGS IDIMKMIISL SDVHINRPCG 120 LDKSTALXXX XXXXAENAVV AVKLLLAAGA DPNAVDANGH RPLDVIVFPP KLEFVKNSLE 180 ELLQTDDPSA GCNLRVITTS FNTYSPPLSA SPENGSPSPP DLLLKLKSID VPISPAASEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKY 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE 360 ELRPLYVSTG SAVPSPRSST SSAMDFAAAM SMLPGSPSSM SVMSPSPFTP PMSPSGNGIS 420 HSSVAWPQPN IPALHLPGSN LQSSRLRSSL NARDIHMDDF DLLSDYDQQQ QLINELSCLS 480 PHTMNSNSLS RSGRMKPLTP SNLDDLFSAE SSSPRYADPV FSPTHKSAVF NQFQQQQNML 540 APVNTNFSSK NVEHHLLQAA SFGVQPSGRM SPRNVEPISP MSSRMSMLAQ REKHQQFRSL 600 SFREHGSNSM AAAATGAVNS WSKWESPNGK LDWAHNADEV GKLRRSSSFE LGNNGEEPDL 660 SWVQSLVKES PTEIKEKLAT SISGVTPAGS SGEGSNMSTQ MESVDHAAVL GTWLEQIQLD 720 HLVAQQN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155885 | 0.0 | AC155885.2 Medicago truncatula chromosome 7 clone mth2-10p23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493518.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S2XTT0 | 0.0 | A0A1S2XTT0_CICAR; zinc finger CCCH domain-containing protein 30 | ||||
STRING | XP_004493518.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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