PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493482.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 415aa    MW: 46383.8 Da    PI: 8.8279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-1759118155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_004493482.1  59 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 118
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-1759127IPR016177DNA-binding domain
PfamPF008476.2E-1359118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1560127IPR001471AP2/ERF domain
SMARTSM003801.9E-2560132IPR001471AP2/ERF domain
PROSITE profilePS5103220.12660126IPR001471AP2/ERF domain
PRINTSPR003674.1E-56172IPR001471AP2/ERF domain
PRINTSPR003674.1E-5108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MASSSSDPGK SAETSEALAA ANDQLLLYRG LKKAKKERGC TAKERISKMP PCAAGKRSSI  60
YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVYLGAYD DEEAAARAYD LAALKYWGPG  120
TLINFPVTDY TRDLEEMQNV SREEYLASLR RKSSGFSRGL SKYRGLSSRW EPSYGRMAGS  180
DYFSSIHYGD DSAAESEYVS GFCIERKIDL TNHIKWWGSN KNRQSDAGTR LSEEKKHGFA  240
GDIYSELKTL EQKVQPTEPY KMPELGRLHN DKKHKSSSMS ALSILSHSAA YKSLQEKVTK  300
KPENSAGNDE NENKNTVNEL DHGKAVEKSS NHEGGNDRLD IAMGMSGALS LQRNVYPLTP  360
FLSAPLLTAY NTVDPLVDPV LWTSLVPMLP AGLSRTAEVT KTETDSTYTM FQPEE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493482.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-171AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1S2XRN10.0A0A1S2XRN1_CICAR; AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
STRINGXP_004493481.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-166AP2 family protein