PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493411.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HRT-like
Protein Properties Length: 384aa    MW: 43346.3 Da    PI: 10.1727
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.64.3e-18262291130
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                     iCGv+l dGs+Ckr+Pv++R RC eHKGmR
  XP_004493411.1 262 ICGVMLADGSICKRPPVEKRVRCPEHKGMR 291
                     8****************************9 PP
2HRT-like61.41.4e-19345375131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCG+il+dGs+C+rqPvkgRKRC+eHKG+Ri
  XP_004493411.1 345 ICGIILDDGSTCRRQPVKGRKRCHEHKGKRI 375
                     8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVTNRLKREQ CDRTKHDSSF SHWKILIGPS DWEDYSKGKE GSTRYRVHNL PQKLGPGVYE  60
LGVAVSRSGL GREIYKLAAD PRRIIVVYLG KADNVRARLQ CYGRNGAHLG NSYLSDDSSL  120
QMGRSLFQEI FSQGFPIVYR WAPMQNTGEA LSTEAQLLST FDYAWNTIKN GTRRPNDILE  180
MLNNFASGTT TFSDVAKLLL PFTQKKVGIP IKSSKLPLTD DKLDEADNGR YNFLSRVFKF  240
NRSRPRIVQD TTDGATHENA KICGVMLADG SICKRPPVEK RVRCPEHKGM RRNVSTAKAS  300
RAPKAELESI VGNAYRYQNV NHDVEDPPQK VVDSHVEESI TKTIICGIIL DDGSTCRRQP  360
VKGRKRCHEH KGKRIRASIH TNQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479610.0AC147961.3 Medicago truncatula chromosome 7 clone mth2-39i23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493411.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A1S3E0H30.0A0A1S3E0H3_CICAR; protein EFFECTOR OF TRANSCRIPTION 2-like
STRINGXP_004493411.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.17e-92effector of transcription2