PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493366.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 302aa    MW: 33447.3 Da    PI: 7.0787
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-30102155155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_004493366.1 102 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 155
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05999158IPR017930Myb domain
SuperFamilySSF466892.87E-2099159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30101160IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-24103155IPR006447Myb domain, plants
PfamPF002491.2E-7105154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MREEESNRFS RWEEQLPPPE ELPLPEELMP LSQTLITPDL AIAFDIRNPH TTINNNNPHH  60
HHQQHHQQPP PPSSLPSSTD FADSGELGSG TAGEEPARTL KRPRLVWTPQ LHKRFVDAVA  120
HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGIPSAGGGG SGGGSASVND  180
PATDHLFASS PVPPHFLHPV ARPNSDHFMP FVPVPAIHHQ QQLAAAQYHR PVGHFGSPPN  240
GHFENPFLSR QQQHQHQHQQ QQQLHRIGAQ VHNPIGGYVE DMESANASGG RKVLTLFPTG  300
DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-32102158157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493366.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493366.10.0transcription factor MYBC1
SwissprotO222105e-61MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1S2XRE60.0A0A1S2XRE6_CICAR; transcription factor MYBC1
STRINGXP_004493366.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-81G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]