PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493356.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 307aa    MW: 33969.8 Da    PI: 9.5398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-0698120123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F+++  L  H++ H
  XP_004493356.1  98 FPCHYCNKKFPTSQALGGHQNAH 120
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-696127No hitNo description
Gene3DG3DSA:3.30.160.602.6E-496126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15798125IPR007087Zinc finger, C2H2
PfamPF139121.1E-698122IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSDRISIGNV EDRKLKRKME IESEPSSTPT SESKGVDLED LLTLRLGGIH DKPISKFMKN  60
SGDSSSSTQK VSGEPLFSSS STQKASGEPL FESEVKEFPC HYCNKKFPTS QALGGHQNAH  120
KRERVFTKLE RKRREDEIDA ALRYRSNVYT YPFPSPIPYH QGLPYYRSHI NNPMPSWPIG  180
SPSGGYGGVY MSNTPPTTPQ FGMQMSNPSL GTSQFGTNNY WSGGHGATLP IQQRSNPLDI  240
GHYTRSINQT SPSVVEGVHR NFNGNFRSQT LSLLSRATIS EGLVQTNSNV SSSKQSTSDQ  300
LDLKLSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493356.10.0zinc finger protein 3-like
TrEMBLA0A1S2XRE70.0A0A1S2XRE7_CICAR; zinc finger protein 3-like
STRINGXP_004493356.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-12C2H2 family protein