PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004493285.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 279aa MW: 30646.1 Da PI: 6.3202

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004493285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.6e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_004493285.1 46 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.884	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-24	135	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MYHAKKFPQA TMVPHKSQGG AEQLANVGVL NGSAVKNVAP AGGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD GKDSKDEKRN 120 SGDSNSGAES SPGLQINDAL RMQMEVQKRL HEQLEVQKQL QMRIEAQGKY LQKIIEEQQK 180 LGSTLTASET FPLPHEKQNH PQSEPSGSSD ALADTFSPLK KQRIDEGSKD GFDASQVPRK 240 TAQKNDCNVG LMDPNLYGDD AGLGFDLETE NEEDNESEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004493285.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ007311	0.0	HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493285.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-69	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1S2XR95	0.0	A0A1S2XR95_CICAR; myb family transcription factor PHL7-like isoform X1
STRING	XP_004493285.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-72	G2-like family protein