PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493238.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 344aa    MW: 38665.8 Da    PI: 8.0316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-1799144147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_004493238.1  99 RGHWRPVEDAKLKELVAEYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 144
                      899*****************************.***********996 PP
2Myb_DNA-binding56.94.8e-18151194146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  +++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_004493238.1 151 RRTFSEEEEERLLAAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 194
                      6689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.27394145IPR017930Myb domain
SMARTSM007174.1E-1598147IPR001005SANT/Myb domain
PfamPF002491.2E-1699144IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-2899192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-26100152IPR009057Homeodomain-like
CDDcd001676.99E-14102143No hitNo description
PROSITE profilePS5129426.623146200IPR017930Myb domain
SMARTSM007172.2E-15150198IPR001005SANT/Myb domain
PfamPF002491.6E-14151193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-20153198IPR009057Homeodomain-like
CDDcd001671.59E-7162193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MTSHKFNIGV EGFNGDMGLY PLAPIPSSHL VNSQTHLLTN TVMVPKPEMG LQILRPSTMF  60
QSKEIMGTKE EDLSLKLGDE VEDKNSVSVK IGYSKLCSRG HWRPVEDAKL KELVAEYGPQ  120
NWNLIAEHLE GRSGKSCRLR WFNQLDPRIN RRTFSEEEEE RLLAAHKMYG NKWAMIARLF  180
PGRTDNAVKN HWHVIMARRH REKCSVYRRR KPPAVENLSK GLKLSLLNNA ASDSTISSTI  240
DDQNHHGFGS LMGQSRESVV ATRDVSFDKY FGDCNKQEQV EKLMVKEVDQ SNFSDSNSEV  300
SVSESVATNR SNLSISGESE NVGAAVKINN MLPFIDFLGV GAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-34991997107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197211RRHREKCSVYRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1574721e-113AC157472.3 Medicago truncatula chromosome 7 clone mth2-41h16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493238.10.0transcription factor MYB54 isoform X2
TrEMBLA0A1S2XSF00.0A0A1S2XSF0_CICAR; transcription factor MYB54 isoform X2
STRINGXP_004493237.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-71myb domain protein 105