PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004493227.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 436aa MW: 48302 Da PI: 6.9131

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004493227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ XP_004493227.1 102 PEKIIQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MNMSETEKDP VFKLFGWKIP LPECQIPANS PPKDTCSSTK KTEVEILSSE KNEQQENSSD 60 SMDSKQESQH NMKEKEPKEN SKPAEDDRET SETDEDKTLK KPEKIIQCPR CNSLDTKFCY 120 FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LVSQYRHIIV TSDGIPNTSS 180 SGHNHVSSLD LSGCYRSSSD NETVLKFGPD TPICEPMESM LNLQQQKRSA DADSINTVQH 240 REEPSLCRSS VTNTGTQGNE LSEQNMSNWF QCYPVHPWVL PMNPSWNNVA SMAAVHPISA 300 SMCNPYSAAP TAMQWCPAPL LAIPGIRPQN IPLQLVSASH WNGQPILAAG TGTVSIGSSA 360 CISPPSSTSN SCYSGNGSAT LGKHTRDTVF ADEDKSDKHV QVRKMLRIDV TDEDPKSPIR 420 ATLAIKKPNE QGKESI

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MNMSETEKDP VFKLFGWKIP LPECQIPANS PPKDTCSSTK KTEVEILSSE KNEQQENSSD  60
SMDSKQESQH NMKEKEPKEN SKPAEDDRET SETDEDKTLK KPEKIIQCPR CNSLDTKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LVSQYRHIIV TSDGIPNTSS  180
SGHNHVSSLD LSGCYRSSSD NETVLKFGPD TPICEPMESM LNLQQQKRSA DADSINTVQH  240
REEPSLCRSS VTNTGTQGNE LSEQNMSNWF QCYPVHPWVL PMNPSWNNVA SMAAVHPISA  300
SMCNPYSAAP TAMQWCPAPL LAIPGIRPQN IPLQLVSASH WNGQPILAAG TGTVSIGSSA  360
CISPPSSTSN SCYSGNGSAT LGKHTRDTVF ADEDKSDKHV QVRKMLRIDV TDEDPKSPIR  420
ATLAIKKPNE QGKESI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004493227.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493227.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A1S2XSE5	0.0	A0A1S2XSE5_CICAR; cyclic dof factor 3-like
STRING	XP_004493227.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-42	cycling DOF factor 2