PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493146.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 274aa    MW: 30948.1 Da    PI: 8.319
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.6e-17202236135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  XP_004493146.1 202 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 236
                     *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.279196232IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-14196250IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-14199260No hitNo description
Gene3DG3DSA:3.30.50.103.8E-13200234IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-11201248No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003208.1E-15202236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKMDVCQNVS VSDDCKQEKV LSTFSTSLDD LFSTQNMEVD VGMEWLSVFV EDCFSSPQSC  60
VLLPSNVQNT TTTTTTTIST KPSNTMKRQN QNESPLQNFT IPGKARSKRK RLSAPRTNKN  120
PLSIWSNTLN PKNELIGCDP PLLKQAYWLA DSELIVPKGE KNVVEKEIVV KKEEKIEDDI  180
VFKNENENEN ESENSSIPTR RCTHCLSQRT PQWRAGPLGP KTLCNACGVR YKSGRLLPEY  240
RPAKSPTFVS YLHSNSHKKV MEMRNMSSSI PTHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1450241e-75AC145024.52 Medicago truncatula clone mth2-24p8, complete sequence.
GenBankAC1677111e-75AC167711.1 Medicago truncatula chromosome 7 clone mth2-167p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493146.10.0GATA transcription factor 9-like
RefseqXP_004517300.10.0GATA transcription factor 9-like
TrEMBLA0A1S2Z9790.0A0A1S2Z979_CICAR; GATA transcription factor 9-like
STRINGXP_004493146.10.0(Cicer arietinum)
STRINGXP_004517300.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-38GATA transcription factor 9