PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 274aa MW: 30948.1 Da PI: 8.319 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.8 | 5.6e-17 | 202 | 236 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l XP_004493146.1 202 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 236 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.279 | 196 | 232 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-14 | 196 | 250 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-14 | 199 | 260 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-13 | 200 | 234 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.28E-11 | 201 | 248 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 202 | 227 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.1E-15 | 202 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MKMDVCQNVS VSDDCKQEKV LSTFSTSLDD LFSTQNMEVD VGMEWLSVFV EDCFSSPQSC 60 VLLPSNVQNT TTTTTTTIST KPSNTMKRQN QNESPLQNFT IPGKARSKRK RLSAPRTNKN 120 PLSIWSNTLN PKNELIGCDP PLLKQAYWLA DSELIVPKGE KNVVEKEIVV KKEEKIEDDI 180 VFKNENENEN ESENSSIPTR RCTHCLSQRT PQWRAGPLGP KTLCNACGVR YKSGRLLPEY 240 RPAKSPTFVS YLHSNSHKKV MEMRNMSSSI PTHD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493146.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145024 | 1e-75 | AC145024.52 Medicago truncatula clone mth2-24p8, complete sequence. | |||
GenBank | AC167711 | 1e-75 | AC167711.1 Medicago truncatula chromosome 7 clone mth2-167p21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493146.1 | 0.0 | GATA transcription factor 9-like | ||||
Refseq | XP_004517300.1 | 0.0 | GATA transcription factor 9-like | ||||
TrEMBL | A0A1S2Z979 | 0.0 | A0A1S2Z979_CICAR; GATA transcription factor 9-like | ||||
STRING | XP_004493146.1 | 0.0 | (Cicer arietinum) | ||||
STRING | XP_004517300.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 7e-38 | GATA transcription factor 9 |