PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493138.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 388aa    MW: 44261.4 Da    PI: 7.5567
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM185.31.4e-57171441129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++v+yL++kv+++k+++ ++i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ 
  XP_004493138.1  17 LPPGFRFHPTDEEIIVCYLTEKVKNSKFSA-TAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATDSGYWKATGKDKEIFKG 110
                     79**************************99.88***************99999****************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle
  XP_004493138.1 111 KGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 144
                     *******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-6115169IPR003441NAC domain
PROSITE profilePS510055817168IPR003441NAC domain
PfamPF023651.3E-2818143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEPIVVNKG EDQGLDLPPG FRFHPTDEEI IVCYLTEKVK NSKFSATAIG EADLNKCEPW  60
DLPKKAKMGE KEWYFFCQKD RKYPTGMRTN RATDSGYWKA TGKDKEIFKG KGNLVGMKKT  120
LVFYRGRAPK GEKTNWVMHE FRLEGKFANY HLPKAAKDEW VVSRVFHKNT DVKKTQISGL  180
LRMNSINDDL LDYSSLPPLM DPSYTSDELK GITNQISSSK SQSDGYYLPS FSINNHNQLV  240
IKPEDHNHRN YDQTQTIMNY TSNISNSIQS NLNNPIGNTL SQPQIRIQNQ NLNYFVYQQN  300
RMQNVNSISS FGNNHDQAFV RPFGAKNNSE CKMEQFSSNQ SQDTGLSNDT SSAVSKQDMG  360
RNRALYEDLE GPSSSVAPLS DLECLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-531517415171NO APICAL MERISTEM PROTEIN
1ut4_B3e-531517415171NO APICAL MERISTEM PROTEIN
1ut7_A3e-531517415171NO APICAL MERISTEM PROTEIN
1ut7_B3e-531517415171NO APICAL MERISTEM PROTEIN
3swm_A3e-531517418174NAC domain-containing protein 19
3swm_B3e-531517418174NAC domain-containing protein 19
3swm_C3e-531517418174NAC domain-containing protein 19
3swm_D3e-531517418174NAC domain-containing protein 19
3swp_A3e-531517418174NAC domain-containing protein 19
3swp_B3e-531517418174NAC domain-containing protein 19
3swp_C3e-531517418174NAC domain-containing protein 19
3swp_D3e-531517418174NAC domain-containing protein 19
4dul_A3e-531517415171NAC domain-containing protein 19
4dul_B3e-531517415171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1412630.0BT141263.1 Medicago truncatula clone JCVI-FLMt-18I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493138.10.0NAC domain-containing protein 87
SwissprotQ9FK441e-115NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1S2XS690.0A0A1S2XS69_CICAR; NAC domain-containing protein 87
STRINGXP_004493138.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-107Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]