PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 605aa MW: 68406.9 Da PI: 4.4259 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 76 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++v+++G g+W+++ + +g+ R++k+c++rw ++l XP_004493026.1 76 KGSWTPAEDAILVEYVQKYGEGNWSAVQKIFGLARCGKSCRLRWTNHL 123 799******************************************996 PP | |||||||
2 | Myb_DNA-binding | 43 | 1e-13 | 129 | 172 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE++ll++ + +l ++ W++Ia ++ gRt++++k++w++ XP_004493026.1 129 KDAFTAEEEKLLIEQHYLLRNK-WSRIALSLP-GRTDNEIKNYWHT 172 679*******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.22 | 71 | 127 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-29 | 73 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 75 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 77 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-12 | 78 | 123 | No hit | No description |
Pfam | PF13921 | 3.8E-16 | 79 | 140 | No hit | No description |
PROSITE profile | PS51294 | 16.926 | 128 | 178 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-12 | 128 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.66E-10 | 131 | 172 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-20 | 131 | 176 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MSSISKKDEG GKIVQPSRSL ESPEDDNCKT VKLKRSRPFS PEVTVNGGSQ PSVSAEEADN 60 DNRDNIEGGG DGNLKKGSWT PAEDAILVEY VQKYGEGNWS AVQKIFGLAR CGKSCRLRWT 120 NHLRPDLRKD AFTAEEEKLL IEQHYLLRNK WSRIALSLPG RTDNEIKNYW HTRVKRMKKA 180 GLPIYPEEIV QRANNMNQDH LNDDVVANQN DDDSQRENFE IPDVVFKSFK LCPDAIVLPP 240 QLNMQGSGLV DQNIDSIYNI LFVPPSKRAR LEDTTFNRPD NYTSNAAAIP VFDKCENYCM 300 LSPSPSDSIL DNSDQFHEDD DNLTVDNHEH DDNLTFDHHA LNNISSSEPI YDGCMRNELP 360 SFQNLETQQC SLDMPASRFP LHESVDASIQ FPPIEDSNQS ILYPDNRGPL NTTSSFHNHS 420 NGTNLQEGME RTALNEAFKS STYNAYEESS AQFMSSDYNN NHISMFSMAE SYSYPLETPD 480 GYGGINQNAQ FIDNSFINGD LDQLNLTHQD ALPDFNSHYI IQNAQLIDNS FMHGDLNQLN 540 FTAHSSMVGS LNQIDLAHHL SNFNAPGINQ NTFNQFTDGY LNQDLTQADD FSWCRYISEP 600 NTEYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 70 | 176 | 1 | 106 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493026.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493026.1 | 0.0 | transcription factor MYB65-like | ||||
TrEMBL | A0A1S2XQQ9 | 0.0 | A0A1S2XQQ9_CICAR; transcription factor MYB65-like | ||||
STRING | XP_004493026.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-54 | myb domain protein 101 |