PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 23475.3 Da PI: 8.7802 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.1 | 6.6e-27 | 17 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G+rF+Ptd+ lv++yLkkkv + +l+ ++i ++d++++ePw Lp ++a +++++yfF r+++ + r + +g W++ k+ e+ XP_004492996.1 17 LPVGYRFDPTDDVLVCFYLKKKVYNLTLPY-HAILDFDVFQTEPWLLPGDLNAfKDRRYYFFDIRQREFD--NMDIRPAGNGEWRTIEKNMELDL 108 799***************************.88***************6555547789999999999875..478888899************** PP NAM 95 kkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++ vg k+tLvf+ k++ ++ t+W+mhe+rl XP_004492996.1 109 PSQFFVGKKNTLVFWwKKQGNQHIMTRWMMHEFRL 143 99999*********96667777889********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-31 | 14 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.362 | 17 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-16 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MALDFLAEFD QPDCRRLPVG YRFDPTDDVL VCFYLKKKVY NLTLPYHAIL DFDVFQTEPW 60 LLPGDLNAFK DRRYYFFDIR QREFDNMDIR PAGNGEWRTI EKNMELDLPS QFFVGKKNTL 120 VFWWKKQGNQ HIMTRWMMHE FRLTTVIQPT KISAVGAYRI FKRKLEKPLR NNIIRPVVID 180 FTMEDATACP PPPPMSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-18 | 17 | 143 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492996.1 | 1e-146 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A1S2XRW6 | 1e-144 | A0A1S2XRW6_CICAR; NAC domain-containing protein 83 | ||||
STRING | XP_004492996.1 | 1e-145 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-23 | NAC domain containing protein 47 |