PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 346aa MW: 38600.5 Da PI: 10.0549 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.9 | 2.3e-22 | 40 | 133 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 +Wt +e+ aLi+a+r+++ +l+r++lk+++W+ev++++ + + +++++qC++k+e+l+kry+ + ++ ++ +s+sss++++f++++ XP_004492904.1 40 CWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVtarcpNASPTNKTAVQCRHKMEKLRKRYRSEIQRLRSLpipRSRSSSSWVHFKSMD 133 8***************************************9999*****************************99865559999*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-20 | 39 | 135 | No hit | No description |
PROSITE profile | PS50090 | 6.284 | 41 | 102 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.0E-11 | 48 | 140 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MASSPPSSPT DSNPPSAVPL PLPSSAPPPT TSSRRLPPPC WTPEETAALI DAYRDKWYSL 60 GRTNLKATHW QEVADAVTAR CPNASPTNKT AVQCRHKMEK LRKRYRSEIQ RLRSLPIPRS 120 RSSSSWVHFK SMDSMEKGPS PPPKLENPNH HRETLDENDD LDDDDLYEEL KSAAAGGSGS 180 GNTRSLDKLY RNGASGGGFR IRIPTGVSVA QPGSKFFGHQ KMNNNQSESG SRGCINGGTR 240 LVKERVGLGK REREREVERE RDPVGEMVSA IKVLRDGFVR MEQMKMEMAR EIETMRMEME 300 MKRTEMILES QQRIVEAFAK AVSEKNKKKL HKGNSNNNTV ASPSES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492904.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149129 | 2e-84 | AC149129.3 Medicago truncatula chromosome 7 clone mth2-139m18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492904.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1S2XQG4 | 0.0 | A0A1S2XQG4_CICAR; trihelix transcription factor ASIL2-like | ||||
STRING | XP_004492904.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4638 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 6e-50 | Trihelix family protein |