PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492865.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 683aa    MW: 76443.1 Da    PI: 6.8685
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.3e-15258317155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_004492865.1 258 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 317
                     57*******************666664478446*************************98 PP
2AP246.31e-14360411155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_004492865.1 360 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 411
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-11258317IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17258327IPR016177DNA-binding domain
CDDcd000189.15E-23258327No hitNo description
Gene3DG3DSA:3.30.730.101.9E-15259326IPR001471AP2/ERF domain
PROSITE profilePS5103219.164259325IPR001471AP2/ERF domain
SMARTSM003804.8E-29259331IPR001471AP2/ERF domain
PRINTSPR003674.2E-6260271IPR001471AP2/ERF domain
CDDcd000182.93E-25360419No hitNo description
PfamPF008473.5E-10360411IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17360420IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-18361419IPR001471AP2/ERF domain
PROSITE profilePS5103219.058361419IPR001471AP2/ERF domain
SMARTSM003801.3E-33361425IPR001471AP2/ERF domain
PRINTSPR003674.2E-6401421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MASMNLLGFS LSPQEHPSTQ DQTVASRFGF NHPDGISSSN QVQQDQCFDL STPHHSSLNH  60
LSHPFSIYEA FHTNNNIHTT QDWKQNYNNQ NLLLGASCIN QNANNNHQQV QPKLENFLGG  120
HSFTDHQEYG SNSVVSPYSS IQLPVQSEAV CGDGNTSNTN SIGLSMIKTW LRNQPPPENN  180
NNESGGRVQT LSLSMSTGSQ SSSSVPLINA NVSGEISSSS ENKQPPATTT AALDSNQSGV  240
NENTVPRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG RQVYLGGYDK  300
EEKAARAYDL AALKYWGTTT TTNFPISHYE KELEEMKHMT RQEYVASLRR KSSGFSRGAS  360
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDVAAIKFR GLSAVTNFDM  420
NRYDVKSILE SSTLPIGGAA KRLKDMEQVV ELNVDNVHRT EQDHSTTIIN TSHLTDHHQT  480
INNNNNNNNY GAWHGLSFQQ QHHPYNTTTN NNMQLHNYTY GTQTQKLWCK QEQDSDDHHS  540
YDHIHHQLQL GNSNNNSTHN FFQPNSGLQN MMNMDSGSMD NNSSASNSVV YGGDHGNNGY  600
GGSYMIPMVN ENEIKGFGYE NVFGTSDPYH AHARNLYYQQ QLTVDQGGSN SNNNNNWVPT  660
AIPTITPRTT NVSLCPPFTL LHE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8999090.0AY899909.1 Medicago truncatula AP2/EREBP transcription factor BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492865.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ41e-146BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A1S2XQD50.0A0A1S2XQD5_CICAR; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_004492865.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-133AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]