PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 827aa MW: 91382.3 Da PI: 6.7018 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.5 | 7.1e-21 | 145 | 200 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k XP_004492677.1 145 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 200 688999***********************************************999 PP | |||||||
2 | START | 202.8 | 1.5e-63 | 339 | 565 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++a++el+k+a+ +ep+W s e++n +e+++++++ + + +ea+r++gvv+ ++ lve+l+d++ +W+e+++ + +t+ XP_004492677.1 339 ELALAATDELMKMAQNSEPLWINKSfeggrEILNHEEYTKIISTPNCkqngFVYEASRETGVVIINSLALVETLMDSN-RWSEMFPcviaRSSTT 432 57999*****************99999**************98766688899**************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwve 168 evis+g galqlm elq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ ++ s+++ +++lpSg+++++++ng+skvtwve XP_004492677.1 433 EVISNGingtrnGALQLMHGELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDRMRETSSdaSPNFLNCRKLPSGCVVQDMPNGYSKVTWVE 527 ************************************************************9999******************************* PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h+++++r++h+l+r l++sg+ +ga++wvatlqrqce+ XP_004492677.1 528 HMEYDERQVHELYRGLLRSGMGFGAQRWVATLQRQCEC 565 ************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-20 | 129 | 202 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 135 | 202 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 142 | 202 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 143 | 206 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.52E-18 | 144 | 202 | No hit | No description |
Pfam | PF00046 | 2.1E-18 | 145 | 200 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 177 | 200 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.574 | 330 | 568 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.14E-33 | 331 | 565 | No hit | No description |
CDD | cd08875 | 5.68E-117 | 334 | 564 | No hit | No description |
SMART | SM00234 | 5.1E-44 | 339 | 565 | IPR002913 | START domain |
Pfam | PF01852 | 3.1E-55 | 339 | 565 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.71E-22 | 587 | 808 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MSFSGLILDN KLDSGETESS KIIAEADITY SNGTNHNNNI IRRISSNINT NRIIMPSGAI 60 SQPRLATPTL VKSMYNSSSL SLALKTNIEG EGGDVNRLMA ENTHEANNSL RRNREEEHES 120 RSIGSDNIDG FSGDDFDAAD NPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR 180 LCLETRQVKF WFQNRRTQMK TQLERHENSL LRQAIDKLRA ENMSIREAIR NPMCSNCGGA 240 SIIGEISLEE EHLRIENARL KDELDRVCAL ASKFMNRPIT SLPNSSSVLG SNNGMNDFGI 300 LTSPLGIVSQ NSTRTTTNMV TSSSSNGFDR SMERSMLLEL ALAATDELMK MAQNSEPLWI 360 NKSFEGGREI LNHEEYTKII STPNCKQNGF VYEASRETGV VIINSLALVE TLMDSNRWSE 420 MFPCVIARSS TTEVISNGIN GTRNGALQLM HGELQVLSPL VPVREVNFLR FCKQHAEGVW 480 AVVDVSIDRM RETSSDASPN FLNCRKLPSG CVVQDMPNGY SKVTWVEHME YDERQVHELY 540 RGLLRSGMGF GAQRWVATLQ RQCECLAILM SSTTLPSTQH SAISTGGKRS MLKLAQRMTN 600 NFCAGVCAST VHQWNKLNVG NVGVDVRVMT RKSIDDPGEP PGIVLSAGTS VWLPASPQRV 660 FDFLRDERLR SEWDILSNGG PMQEMAHIAK GHNHGNSVSL LRASANNSSQ SSMLILQETC 720 TDASGSLVVY APVDIPAMHV VMNGGDSAYV ALLPSGFAVL PDGQCQESNN HGGASQQRAS 780 GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVHKIK TALQCET |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492677.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S2XR60 | 0.0 | A0A1S2XR60_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
STRING | XP_004492677.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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