PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004492611.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 794aa MW: 87950 Da PI: 6.381

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004492611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	408.4	6.6e-125	426	781	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp ++ s +++++a+++f+ +sP++kfsh+ XP_004492611.1 426 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPNTPHS----QKVASAFQVFNGISPFVKFSHF 516 579********************************************************99999985....89999************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 taNqaI ea+++e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+le+tg+rL++fA +lg+pfef + va+++ ++++ XP_004492611.1 517 TANQAIQEAFDREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMETLEATGKRLSDFACKLGLPFEFFP-VAEKVGNVDP 606 *************************************************....***********************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++L+v++ Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl ++++eseer++vE XP_004492611.1 607 DKLNVSKSEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NAGSFLGRFVEAIHYYSALFDSLGCSYGEESEERHVVE 694 ************9..999999999999....***************97.699******************************* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ll+rei+nv+a +g +r + + +++Wre+l+++GF+ ++l +aa+qa+lll +++s+gy++ e++g l lgWkd L+++SaWr XP_004492611.1 695 QQLLSREIRNVLAVRGPSRSGEIK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 781 **************888776.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.497	399	761	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-122	426	781	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MATCALFNGV RCNNSTTEES NNNNNNSASN SSNLSSEELH TLQHNNMLPH SERKILRKRL 60 ASEMEPQIQV HTPQPHPHNS SSTTTDNNNY HRFSRRTNTS SCLPASTQKG VSTTTTTTLA 120 AGTNNNNNNN TNNYHYHNNN NINTNNNNII SQNSNALTSS RDNNVVGIQN YPTVTLTTNY 180 STMLLPSSNL NNFQLEQQQQ QQQHNPLPSI CGFSGLPLFP SQNQTNNTAN NIVDVVNSSS 240 SSSMEETSAT TTWIDGILKD LIHSSNSVSI PQLINNVREI IYPCNPNLAL VLEHRLRLLT 300 ETTPPKNTER LVLPPNNVST MKHMNPVDTI VPSLHFSDSS PIFPNWVVPQ ITNTLQETSN 360 NNNNPLVTLP SQPSTQQDQE EQQQQQQQQI QDLAAAPTAA DLAQTRKKKE EMKEQKKKDE 420 EGLHLLTLLL QCAEAVSAEN LEDANKMLLE ISQLSTPFGT SAQRVAAYFS EAISARLVSS 480 CLGIYATLPN TPHSQKVASA FQVFNGISPF VKFSHFTANQ AIQEAFDRED RVHIIDLDIM 540 QGLQWPGLFH ILASRPGGPP YVRLTGLGTS METLEATGKR LSDFACKLGL PFEFFPVAEK 600 VGNVDPDKLN VSKSEAVAVH WLQHSLYDVT GSDTNTLWLL QRLAPKVVTV VEQDLSNAGS 660 FLGRFVEAIH YYSALFDSLG CSYGEESEER HVVEQQLLSR EIRNVLAVRG PSRSGEIKFH 720 NWREKLQQCG FRGISLAGNA ATQASLLLGM FPSEGYTLVE DNGILKLGWK DLCLLTASAW 780 RPPFHTNNAI PLHN

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MATCALFNGV RCNNSTTEES NNNNNNSASN SSNLSSEELH TLQHNNMLPH SERKILRKRL  60
ASEMEPQIQV HTPQPHPHNS SSTTTDNNNY HRFSRRTNTS SCLPASTQKG VSTTTTTTLA  120
AGTNNNNNNN TNNYHYHNNN NINTNNNNII SQNSNALTSS RDNNVVGIQN YPTVTLTTNY  180
STMLLPSSNL NNFQLEQQQQ QQQHNPLPSI CGFSGLPLFP SQNQTNNTAN NIVDVVNSSS  240
SSSMEETSAT TTWIDGILKD LIHSSNSVSI PQLINNVREI IYPCNPNLAL VLEHRLRLLT  300
ETTPPKNTER LVLPPNNVST MKHMNPVDTI VPSLHFSDSS PIFPNWVVPQ ITNTLQETSN  360
NNNNPLVTLP SQPSTQQDQE EQQQQQQQQI QDLAAAPTAA DLAQTRKKKE EMKEQKKKDE  420
EGLHLLTLLL QCAEAVSAEN LEDANKMLLE ISQLSTPFGT SAQRVAAYFS EAISARLVSS  480
CLGIYATLPN TPHSQKVASA FQVFNGISPF VKFSHFTANQ AIQEAFDRED RVHIIDLDIM  540
QGLQWPGLFH ILASRPGGPP YVRLTGLGTS METLEATGKR LSDFACKLGL PFEFFPVAEK  600
VGNVDPDKLN VSKSEAVAVH WLQHSLYDVT GSDTNTLWLL QRLAPKVVTV VEQDLSNAGS  660
FLGRFVEAIH YYSALFDSLG CSYGEESEER HVVEQQLLSR EIRNVLAVRG PSRSGEIKFH  720
NWREKLQQCG FRGISLAGNA ATQASLLLGM FPSEGYTLVE DNGILKLGWK DLCLLTASAW  780
RPPFHTNNAI PLHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	408	782	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004492611.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB048713	0.0	AB048713.1 Pisum sativum PsSCR mRNA for SCARECROW, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492611.1	0.0	protein SCARECROW
Swissprot	Q9AVK4	0.0	SCR_PEA; Protein SCARECROW
TrEMBL	A0A1S2XPT0	0.0	A0A1S2XPT0_CICAR; protein SCARECROW
STRING	XP_004492611.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein