PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 316aa MW: 36183.2 Da PI: 6.379 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5e-32 | 73 | 126 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_004492478.1 73 PRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 126 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-29 | 69 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.475 | 69 | 129 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.8E-23 | 73 | 128 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.51E-14 | 73 | 127 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-10 | 74 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEDMREEKTY GSECSKTSVS NEVDGCEISE ENHEDEESKQ NNINEGLSSS NSTIEENNEK 60 KSSVRPYVRS KFPRLRWTPD LHLRFIHAVQ RLGGQERATP KLVLQLMNIK GLSIAHVKSH 120 LQMYRSKKVV DTNQDNGDKN VYNLSQLPML QGYTPNQSSS YRCGYEPIMM ERSNNHMVNM 180 DHSIFQVDSS HFREQSSRSK VHEPNDNFLS FCGHDLQDHP RAQDLMLKDN LLANQVEPNT 240 LKRKASDVEV DLDLSLKLNS RNYQGNIEEH EVDSKLSLSL YSQSSSSYLG SKMKEKDVSK 300 EQGKIRGNNI VLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-18 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-18 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492478.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492478.1 | 0.0 | putative Myb family transcription factor At1g14600 isoform X2 | ||||
TrEMBL | A0A1S2XPD4 | 0.0 | A0A1S2XPD4_CICAR; putative Myb family transcription factor At1g14600 isoform X2 | ||||
STRING | XP_004492477.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-47 | G2-like family protein |