PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492477.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 325aa    MW: 37200.5 Da    PI: 6.451
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-3273126255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  XP_004492477.1  73 PRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 126
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.47569129IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-2969127IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-2373128IPR006447Myb domain, plants
SuperFamilySSF466892.69E-1473127IPR009057Homeodomain-like
PfamPF002498.8E-1074125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDMREEKTY GSECSKTSVS NEVDGCEISE ENHEDEESKQ NNINEGLSSS NSTIEENNEK  60
KSSVRPYVRS KFPRLRWTPD LHLRFIHAVQ RLGGQERATP KLVLQLMNIK GLSIAHVKSH  120
LQMYRSKKVV DTNQVLADHR LLVDNGDKNV YNLSQLPMLQ GYTPNQSSSY RCGYEPIMME  180
RSNNHMVNMD HSIFQVDSSH FREQSSRSKV HEPNDNFLSF CGHDLQDHPR AQDLMLKDNL  240
LANQVEPNTL KRKASDVEVD LDLSLKLNSR NYQGNIEEHE VDSKLSLSLY SQSSSSYLGS  300
KMKEKDVSKE QGKIRGNNIV LDLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1874128458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492477.10.0putative Myb family transcription factor At1g14600 isoform X1
TrEMBLA0A1S2XQP00.0A0A1S2XQP0_CICAR; putative Myb family transcription factor At1g14600 isoform X1
STRINGXP_004492477.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-52G2-like family protein