PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492415.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 312aa    MW: 35649.3 Da    PI: 8.3519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.6e-084186346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +l+ +a + + ++   +W ++a++++ g+t  +++  ++ 
   XP_004492415.1 41 KWTQEENKLFENALAYYDKDtpdRWIRVAEMIP-GKTVGDVIKQYRE 86
                     7********************************.******9999986 PP
2Myb_DNA-binding46.11.2e-14148192347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_004492415.1 148 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 192
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2893791IPR017884SANT domain
SMARTSM007171.6E-73890IPR001005SANT/Myb domain
SuperFamilySSF466895.91E-124195IPR009057Homeodomain-like
CDDcd001674.76E-64187No hitNo description
PfamPF002491.6E-64186IPR001005SANT/Myb domain
PROSITE profilePS5129420.205141197IPR017930Myb domain
SuperFamilySSF466892.0E-17142196IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-18144196IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-12145192IPR009057Homeodomain-like
SMARTSM007173.5E-13145195IPR001005SANT/Myb domain
CDDcd001671.01E-10148193No hitNo description
PfamPF002494.2E-12148192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MFSCYMQFLS SRKMNSEIEV LSPSSYIQNS NWLFQENKGA KWTQEENKLF ENALAYYDKD  60
TPDRWIRVAE MIPGKTVGDV IKQYRELEED VCVIEAGLIP VPGYTTSSFT LDWANNQGFD  120
EFKQFCSVGG KRGASTRPTE QERKKGVPWT EEEHRQFLLG LKKYGKGDWR NISRNFVTTR  180
TPTQVASHAQ KYFIRQVTGG KDKRRSSIHD ITVVNLPETK SPLSDGSMPS PNPQKNHKLS  240
SMIKQEYDWK LPDEEAMPFV FNSTTKGNMF VAPLCGIASH ESKPPGCNVL RGIQHGCQFS  300
LPFDTILQMQ HQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1639107876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684780.0EF468478.1 Medicago truncatula MYB transcription factor MYB33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492415.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S2XQJ50.0A0A1S2XQJ5_CICAR; transcription factor DIVARICATA-like
STRINGXP_004492415.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-120MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]