PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004492362.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 745aa MW: 84904.5 Da PI: 6.8262

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004492362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.2	1.4e-113	372	743	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+++d++ a++lL+++++++sp gd +qRla++f+ +L+arla+++s++yk l +++ts ++ l+a++l+ ++P+ k++ XP_004492362.1 372 LRTLLVLCAQAVAADDHKSAHELLKQIRQHSSPFGDGNQRLAHMFADGLEARLAGTGSQIYKGLISKRTS---AADLLKAYHLYLTACPFRKMTS 463 5789**********************************************************999998...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N I+++++++ rvH++Df+i +G+QWp+++q L+ Rp+gpp+lRiTg++ p++g +e+++etg+rLa +Ae+++vpfe+n+ +ak++e+ XP_004492362.1 464 FVSNISIMRSAASSMRVHVVDFGILYGFQWPTFIQRLSIRPGGPPKLRITGIDFPQPGfrPAERIKETGSRLAAYAESFNVPFEYNA-IAKKWET 557 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++leeL+++++E l+V + ++ ++lldesv ++s+r+++L+l+++++P+++++ + n++ F++rf eal ++s+lfd+le +pre+ er+ XP_004492362.1 558 IQLEELKIDRDEYLVVTCFYRGKNLLDESVVVDSPRNKFLSLIRKIKPDIFIHGIINGAFNAPFFVTRFREALFHFSSLFDMLECIVPREDWERM 652 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+e++g+e+ nv+aceg er+er et+++W+ r+ +aGF++ ++++++++ a ++r + + + ++e++++l++gWk+r ++++S+W+ XP_004492362.1 653 LIEKEIFGKEALNVIACEGCERVERPETYRQWQVRILRAGFSQRAFDKNTVERALEIVRSRYHKDFVMDEDRKWLLQGWKGRIVYALSCWK 743 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.823	346	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.8E-111	372	743	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MMDPHLKGFC GSRNEIQLEN QSLPVFQNQR YENVFFYQSR EFGLVESNLI TDTPSLTTSI 60 STHEEPYPED CEFSDAVLSY INKILMEEDM EDKTCMLQDS LDLQIAEKSF YEVIGEKYPV 120 SPLGKSSSLS YQNDGVGDNN FIDNYYGSCV DDGDLSSIFN NNYLRGNSME VQFPHQDFIF 180 NSISQSSYSS TNSVKSTVEG PLDSPDSILQ ITDGNSENQP ILQFQKGVEE ANKFLPSGKG 240 FFPNLDVAKY SILEPKVMKD ELSVKVEKDD QKSFLYGSKG RKHPHGEEGD IEENRSNKQA 300 AIYSEPTLRS TMFDIILLHS LGDGRNYFMA RREALQTKIK MINLPSSKSK KATSCGKGRG 360 KKQHGKTEVV DLRTLLVLCA QAVAADDHKS AHELLKQIRQ HSSPFGDGNQ RLAHMFADGL 420 EARLAGTGSQ IYKGLISKRT SAADLLKAYH LYLTACPFRK MTSFVSNISI MRSAASSMRV 480 HVVDFGILYG FQWPTFIQRL SIRPGGPPKL RITGIDFPQP GFRPAERIKE TGSRLAAYAE 540 SFNVPFEYNA IAKKWETIQL EELKIDRDEY LVVTCFYRGK NLLDESVVVD SPRNKFLSLI 600 RKIKPDIFIH GIINGAFNAP FFVTRFREAL FHFSSLFDML ECIVPREDWE RMLIEKEIFG 660 KEALNVIACE GCERVERPET YRQWQVRILR AGFSQRAFDK NTVERALEIV RSRYHKDFVM 720 DEDRKWLLQG WKGRIVYALS CWKPA

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MMDPHLKGFC GSRNEIQLEN QSLPVFQNQR YENVFFYQSR EFGLVESNLI TDTPSLTTSI  60
STHEEPYPED CEFSDAVLSY INKILMEEDM EDKTCMLQDS LDLQIAEKSF YEVIGEKYPV  120
SPLGKSSSLS YQNDGVGDNN FIDNYYGSCV DDGDLSSIFN NNYLRGNSME VQFPHQDFIF  180
NSISQSSYSS TNSVKSTVEG PLDSPDSILQ ITDGNSENQP ILQFQKGVEE ANKFLPSGKG  240
FFPNLDVAKY SILEPKVMKD ELSVKVEKDD QKSFLYGSKG RKHPHGEEGD IEENRSNKQA  300
AIYSEPTLRS TMFDIILLHS LGDGRNYFMA RREALQTKIK MINLPSSKSK KATSCGKGRG  360
KKQHGKTEVV DLRTLLVLCA QAVAADDHKS AHELLKQIRQ HSSPFGDGNQ RLAHMFADGL  420
EARLAGTGSQ IYKGLISKRT SAADLLKAYH LYLTACPFRK MTSFVSNISI MRSAASSMRV  480
HVVDFGILYG FQWPTFIQRL SIRPGGPPKL RITGIDFPQP GFRPAERIKE TGSRLAAYAE  540
SFNVPFEYNA IAKKWETIQL EELKIDRDEY LVVTCFYRGK NLLDESVVVD SPRNKFLSLI  600
RKIKPDIFIH GIINGAFNAP FFVTRFREAL FHFSSLFDML ECIVPREDWE RMLIEKEIFG  660
KEALNVIACE GCERVERPET YRQWQVRILR AGFSQRAFDK NTVERALEIV RSRYHKDFVM  720
DEDRKWLLQG WKGRIVYALS CWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-46	379	744	26	380	Protein SCARECROW
5b3h_A	2e-46	379	744	25	379	Protein SCARECROW
5b3h_D	2e-46	379	744	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004492362.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492362.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1S2XP47	0.0	A0A1S2XP47_CICAR; scarecrow-like protein 9
STRING	XP_004492362.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein