PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25715.2 Da PI: 5.3728 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 4e-17 | 56 | 106 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g++v+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ XP_004492188.1 56 TYRGVRMRA-WGKYVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 106 69****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.0E-35 | 56 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 56 | 114 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.234 | 56 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 56 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-12 | 56 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.54E-31 | 57 | 115 | No hit | No description |
PRINTS | PR00367 | 1.0E-9 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MANDANENLS TTSSSLSSSS SSTSNSNSNS CTKNSPQNVM KSKKRERKQN DTKHPTYRGV 60 RMRAWGKYVS EIREPRKKSR IWLGTYPTAE MAARAHDVAA LAIKGHSAYL NFPNLAQNLP 120 RPSTTSPKDI QAAAAKAAAT IFVEIKDQQN QEDQDSSSTL SLENVRESSN SPSSTTTVTT 180 ATTDDDDDDT LFDLPDLLLD DKNGLFSYSS SSWQLCAVDS GLRLEEQLLW EFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 52 | 114 | 10 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492188.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144591 | 1e-118 | AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492188.1 | 1e-171 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 8e-66 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1S2XQ15 | 1e-170 | A0A1S2XQ15_CICAR; ethylene-responsive transcription factor ERF034 | ||||
STRING | XP_004492188.1 | 1e-171 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-48 | ERF family protein |
Publications ? help Back to Top | |||
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