PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492151.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 369aa    MW: 42239.3 Da    PI: 9.2353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017124147123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg+ F +++ L++H +  H
  XP_004492151.1 124 YLCRVCGRKFYTNEKLVNHFKQlH 147
                     56*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.41E-5120150No hitNo description
PROSITE profilePS5015711.323124152IPR007087Zinc finger, C2H2
PROSITE patternPS000280126147IPR007087Zinc finger, C2H2
CDDcd061673.54E-13141278No hitNo description
PfamPF019361.1E-7196280IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.8E-7200285IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVSIPKFCRF FSTIETYGAL RNFHSGGCSR TLNKNPNLAP NEKLFRVGLF WDLDNKPPNS  60
IAPYVVATKL RITAASFGVV RHMVAYGNSH TFSNVPRVVS ERRKERQLLF RLKNKGVIKP  120
NEPYLCRVCG RKFYTNEKLV NHFKQLHERE HLKRVNQIES ARGSRKVKLV GKYSMKMEKY  180
KKAASAVLTP KVGYGLADEL KRAGFWVQTV LDSPQAADIA LKNHIVDMMD HRRVECVVLI  240
SDDYDFVDVI KEAKLRCLKT VVIGDASSDG VLKRTADTAF SWEEILMGKA KKQTVSVVEN  300
WKDRDILKRL EWTYNPNVDK KKVNLDDTAA ETSEDDDIED ICGDIDDDYK DDRGSWWELD  360
PNDNDVASR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474840.0AC147484.21 Medicago truncatula clone mth2-52b4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492151.10.0uncharacterized protein LOC101511516
TrEMBLA0A1S2XPY60.0A0A1S2XPY6_CICAR; uncharacterized protein LOC101511516
STRINGXP_004492151.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-132C2H2 family protein