PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004492130.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 385aa MW: 41819.2 Da PI: 9.4565

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004492130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	77	135	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s+ XP_004492130.1 77 AAQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKRSK 135 6789****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	57	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	78	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MVFPSLPIYL DPTNWSQRQA RIEIGTQNSL PLQLPPASTV ASTVTAEAGG SYQGFIRPGS 60 MADRARMSKI HQNEVAAAQK CPRCESTNTK FCYYNNYNLS QPRHFCKTCR RYWTRGGTLR 120 NVPVGGGCRR NKRSKVNSIS KSSTSKPNHD HRSVGTGVVA GVGGSSSTGA NASSNNGCID 180 SNVNVGMAHF QTQFPFLSSL NHFNNNDYVS GGIGSLMAKN ISNSTTTSVE FQLGNGSSLG 240 NSNVGSLFLS NGIGEQWRFS NPEQVHHHPH QQQQQQQRNQ QFPFLTNLEP QIGLFQFGSG 300 ENNEPPTSFI HSKAIDSSSV GIGTIPQVNN IKMEENNHQV LSLPKNLLSG SGNSNDIFWN 360 GNGNSNANAW NNEVPSFTPS PSQLL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MVFPSLPIYL DPTNWSQRQA RIEIGTQNSL PLQLPPASTV ASTVTAEAGG SYQGFIRPGS  60
MADRARMSKI HQNEVAAAQK CPRCESTNTK FCYYNNYNLS QPRHFCKTCR RYWTRGGTLR  120
NVPVGGGCRR NKRSKVNSIS KSSTSKPNHD HRSVGTGVVA GVGGSSSTGA NASSNNGCID  180
SNVNVGMAHF QTQFPFLSSL NHFNNNDYVS GGIGSLMAKN ISNSTTTSVE FQLGNGSSLG  240
NSNVGSLFLS NGIGEQWRFS NPEQVHHHPH QQQQQQQRNQ QFPFLTNLEP QIGLFQFGSG  300
ENNEPPTSFI HSKAIDSSSV GIGTIPQVNN IKMEENNHQV LSLPKNLLSG SGNSNDIFWN  360
GNGNSNANAW NNEVPSFTPS PSQLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	135	RRNKRSKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004492130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492130.1	0.0	dof zinc finger protein DOF3.6-like
TrEMBL	A0A1S2XPX8	0.0	A0A1S2XPX8_CICAR; dof zinc finger protein DOF3.6-like
STRING	XP_004492130.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-35	DNA binding with one finger 2.4