PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492093.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 177aa    MW: 19825.6 Da    PI: 9.4165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0013860123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_004492093.1 38 FECKTCNRQFSSFQALGGHRASH 60
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.54E-936109No hitNo description
PfamPF139121.2E-123762IPR007087Zinc finger, C2H2
SMARTSM003550.23860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2423865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139126.4E-1086111IPR007087Zinc finger, C2H2
SMARTSM003550.587109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.22487114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKRERESITM ANCLMLLSRG SNQFEATYSS ISSNNRVFEC KTCNRQFSSF QALGGHRASH  60
KKPRLMQENG ENIDGQLLNT PPKPKTHECS ICGLEFAIGQ ALGGHMRRHR ASNLNGNMIH  120
NSNTMSCSSG SLDSSQKMKV VGNKRVFVLD LNLTPFENDL EFFKIGKTTP NLVDYLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467501e-118AC146750.32 Medicago truncatula clone mth2-16o6, complete sequence.
GenBankAC2454971e-118AC245497.2 Medicago truncatula strain A17 clone mtrs-112g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492093.11e-130zinc finger protein ZAT11-like
TrEMBLA0A1S2XQP91e-129A0A1S2XQP9_CICAR; zinc finger protein ZAT11-like
STRINGXP_004492093.11e-130(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-39C2H2 family protein