PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492022.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 337aa    MW: 37218.3 Da    PI: 4.9092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.92.4e-2745136186
        trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rWt+qe+l+Li+++++ e+r++ g+      + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + ++l+
  XP_004492022.1  45 RWTRQEILVLIQGKSDAESRFKPGRngagfgSSEPKWALVSSYCMKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLR 136
                     8*********************986667777*********************************************9999999998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.80638108IPR017877Myb-like domain
CDDcd122039.91E-1444115No hitNo description
PfamPF138376.6E-1345131No hitNo description
Gene3DG3DSA:1.10.10.602.8E-445107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MALDQPSNPN SVDGEGNGND NGNGTPPSAT VNGGEDGRPA ARLPRWTRQE ILVLIQGKSD  60
AESRFKPGRN GAGFGSSEPK WALVSSYCMK HGVNRGPIQC RKRWSNLAGD YKKIKEWESQ  120
VRDETESFWL MRNDLRRERK LPGYFDREVY DILDSPSVAA AATAAMVAPI DVKVSEAVGD  180
EEVHLYDSNR KVSGEDGLFS DFERDEILVP TKDVHVPSPV PISEKQYLPL LHGCKGDGNA  240
QGANNEKQPA TNPGMGSTSQ GERKRKRFAT DGDEEEETLQ SQLIDVLEKN GEMLREQLEA  300
QNMNFQLDRQ HQNDTASNIV AVLDKLANAL GRIADKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492022.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-93ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1S2XNE00.0A0A1S2XNE0_CICAR; trihelix transcription factor ASR3
STRINGXP_004492022.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-94Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]