PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491866.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 236aa    MW: 27456 Da    PI: 6.772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Edell+d+v+++G g W++++++ g++R++k+c++rw++yl
   XP_004491866.1 16 KGAWSQFEDELLKDCVQRFGEGKWHLVPERAGLKRCRKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding47.83.3e-1569113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E +l ++++k+lG++ W++Ia +++ gRt +++k++w++ 
   XP_004491866.1  69 RGEFSEDEVDLMIKLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTN 113
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0111163IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-211266IPR009057Homeodomain-like
SuperFamilySSF466895.19E-2713110IPR009057Homeodomain-like
SMARTSM007172.4E-121565IPR001005SANT/Myb domain
PfamPF002495.0E-151663IPR001005SANT/Myb domain
CDDcd001675.36E-81863No hitNo description
PROSITE profilePS5129423.68764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2267118IPR009057Homeodomain-like
SMARTSM007178.5E-1468116IPR001005SANT/Myb domain
PfamPF002492.2E-1369112IPR001005SANT/Myb domain
CDDcd001677.34E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQASCLVEGS SSGVRKGAWS QFEDELLKDC VQRFGEGKWH LVPERAGLKR CRKSCRLRWL  60
NYLKPNIKRG EFSEDEVDLM IKLHKLLGNR WSLIAGRLPG RTSNDVKNYW NTNMRNKIHS  120
QEKDKTIMKE VIETMKPNEV IKPQPRTFSK KLLEGNKFID LDDNCSKNGI NEVGATSLEA  180
NNWWDTLFEE EKDNNYSWGN GFLQTGFWDE ELNSITTNPF DLLNESQIWS EFLSQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23161184105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9342801e-35AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark.
GenBankAB9342811e-35AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491866.11e-174transcription factor MYB114-like
TrEMBLA0A1S2XN231e-173A0A1S2XN23_CICAR; transcription factor MYB114-like
STRINGXP_004491866.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-60myb domain protein 113