PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491833.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 361aa    MW: 40095.5 Da    PI: 6.625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ ++++ G g+W++ +++ g+ R++k+c++rw +yl
   XP_004491833.1 14 KGPWTPEEDQKLLAYIEENGHGSWRALPSKAGLERCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.36.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_004491833.1  67 RGKFSLQEEQTIIQLHALLGNR-WSSIATHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.093961IPR017930Myb domain
SuperFamilySSF466899.9E-3011108IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001674.59E-101661No hitNo description
PROSITE profilePS5129426.86362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2665116IPR009057Homeodomain-like
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1667112IPR001005SANT/Myb domain
CDDcd001674.62E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE ENGHGSWRAL PSKAGLERCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS SIATHLPKRT DNEIKNYWNT HLKKKLTKLG  120
IDPVTHKSKN ESIFSDGHSK SAANLSHMAQ WESARLEAEA RLVKESKIHT KHSLQHQLGI  180
INSVFPSQSS SSASSSSNQV LHIKPDTIPS DAMKAWLKSN EGNNGSDLES PTSSLSFCEK  240
GIVKDEGEKE WKGYENSTNL EEYKDGMENS MAFPSTMHHE LTMITWGSSD DNAHVSVADE  300
AGFTNLLLNS SNSGDRSLSP ESGGECNTCY GSGGEFCEDN KNYWNDILNL VNSSPSDSSV  360
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491833.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491833.10.0transcription factor MYB106-like isoform X2
SwissprotQ9LE631e-124MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S2XN160.0A0A1S2XN16_CICAR; transcription factor MYB106-like isoform X2
STRINGXP_004491832.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-121myb domain protein 106