PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491816.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 493aa MW: 54400 Da PI: 6.1351

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	126	186	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss XP_004491816.1 126 PDKILPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 186 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-31	123	183	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	128	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MSETKDPAIK LFGKTIPVPD ILVGTPALSS GDVVDESIDQ NHDSSINSSK DEQEQEIVMD 60 TLGDKPTDGK KEDGVPTKSS EEFSTPDAAS RTGEESEREA ATLKTSKIEE EQDETSNSHD 120 KNLKKPDKIL PCPRCSSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR 180 KNKNSSSHYR QITVTESTLQ NSRTDFPRRS YQPSLKCNGT LLTFGSETPL CESVASVLKL 240 ADRTVQNYAR NGFDKPEELR ICVPHATGEK GDDQSNKSSI TSTKSMEGGR TNVSQEQAMS 300 NGQSFPLQGH YFRPGTPWPF PWNPMQWSSP VPPPSLCQPG FSLPLYPATT YWGCTVPGAW 360 NIPWQAQPLS PNGANLNSSP NSPTLGKHSR EDNSIRSSDS SGTDGDGKKE SSEEKCLWFP 420 KTLRIDDSRE AEKSSFWTTL GIKNDNTNSV PSRGLFEAFP SKCDDKNHSV QASLVLQANP 480 AALSRSLNFQ ETS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MSETKDPAIK LFGKTIPVPD ILVGTPALSS GDVVDESIDQ NHDSSINSSK DEQEQEIVMD  60
TLGDKPTDGK KEDGVPTKSS EEFSTPDAAS RTGEESEREA ATLKTSKIEE EQDETSNSHD  120
KNLKKPDKIL PCPRCSSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR  180
KNKNSSSHYR QITVTESTLQ NSRTDFPRRS YQPSLKCNGT LLTFGSETPL CESVASVLKL  240
ADRTVQNYAR NGFDKPEELR ICVPHATGEK GDDQSNKSSI TSTKSMEGGR TNVSQEQAMS  300
NGQSFPLQGH YFRPGTPWPF PWNPMQWSSP VPPPSLCQPG FSLPLYPATT YWGCTVPGAW  360
NIPWQAQPLS PNGANLNSSP NSPTLGKHSR EDNSIRSSDS SGTDGDGKKE SSEEKCLWFP  420
KTLRIDDSRE AEKSSFWTTL GIKNDNTNSV PSRGLFEAFP SKCDDKNHSV QASLVLQANP  480
AALSRSLNFQ ETS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491816.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491816.1	0.0	cyclic dof factor 2
TrEMBL	A0A1S2XQ51	0.0	A0A1S2XQ51_CICAR; cyclic dof factor 2
STRING	XP_004491816.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-97	cycling DOF factor 2