PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491795.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 328aa    MW: 36642.8 Da    PI: 8.0117
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.48e-3470127359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     +v+YkeClkNhAa+lGgha+DGCgEfm+s++++ ++++++kCaACgCHRnFHRre+ee
  XP_004491795.1  70 TVTYKECLKNHAANLGGHALDGCGEFMTSPTATsADPTSIKCAACGCHRNFHRREPEE 127
                     799***************************999899******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1671123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-2771125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-3072124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.83873124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.28E-19199266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-29200266IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-25205262IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDITPTTTTT PTILTTSTTT LTKSPEHETE TPTKITTSNT QTTPKILSFS NGVLKRHHHL  60
NNHHHNHQVT VTYKECLKNH AANLGGHALD GCGEFMTSPT ATSADPTSIK CAACGCHRNF  120
HRREPEEPPL STTTTHVIEY QPHHRHQPLP PPPFSNRSPN SSSPPPISSS YYPSAPHMLI  180
ALSTALPENT AVPNTALISP GSHTRKRFRT KFSQEQKDKM LKFAEKVGWK IQKRDDDLIH  240
EVCNEIGVDR TVLKVWMHNN KNNFTKRDNN NIINNMMESN NNNEIGVKSF LPLEDEEHKA  300
DMNAEIHTHH SHYQNEGGVR ANGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212042631675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491795.10.0zinc-finger homeodomain protein 9
TrEMBLA0A1S2XQ380.0A0A1S2XQ38_CICAR; zinc-finger homeodomain protein 9
STRINGXP_004491795.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-58homeobox protein 34