PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491783.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 93aa    MW: 10546.9 Da    PI: 8.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-0721601655
                    HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    i +   +Lr+l+P+ +   +  K   + +L+++++YI+sLq
  XP_004491783.1 21 IIDLVCKLRQLVPEiRN-RHPNKAPASKVLQETCNYIRSLQ 60
                    5566689*******662.23333555699***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.305559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-82174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-82377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQQS GGSTRISDDQ IIDLVCKLRQ LVPEIRNRHP NKAPASKVLQ ETCNYIRSLQ  60
REVEDLSLRL SQLLDTIDAD SAEASIIRSL LNQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487623e-34AC148762.2 Medicago truncatula clone mth2-15p5, complete sequence.
GenBankAC1663133e-34AC166313.2 Medicago truncatula chromosome 7 clone mte1-4j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491783.14e-60transcription factor PRE6
SwissprotQ9LJX19e-35PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1S2XMX19e-59A0A1S2XMX1_CICAR; transcription factor PRE6
STRINGXP_004491783.12e-59(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-32bHLH family protein