PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | CO-like | ||||||||
Protein Properties | Length: 377aa MW: 41476 Da PI: 4.7499 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 30.4 | 8.1e-10 | 70 | 115 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC +C +H+ H++vp+ XP_004491763.1 70 VWVCEACERAPAAFLCKADAASLCSTCDADIHSAnplasrHQRVPI 115 689*****************************66999999**9997 PP | |||||||
2 | CCT | 70.4 | 4.7e-24 | 308 | 351 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_004491763.1 308 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 351 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.4E-7 | 25 | 72 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.72E-7 | 28 | 72 | No hit | No description |
PROSITE profile | PS50119 | 9.741 | 30 | 72 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.206 | 68 | 115 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-7 | 69 | 115 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.17E-8 | 71 | 115 | No hit | No description |
SMART | SM00336 | 2.3E-10 | 73 | 115 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.3E-18 | 308 | 350 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 308 | 350 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MLEQELFTTT TTSATATATI RPAVTWPRTC DTCRSAACAV FCRADLAYLC AACDARVHAA 60 NRVASRHERV WVCEACERAP AAFLCKADAA SLCSTCDADI HSANPLASRH QRVPILTISG 120 YLYGPPATLL GAEDHEGFVG GGGDVEEEED EVVDNMEDED EAASWLLLNP LKNSNNNNNS 180 NDHNQEGNNG FLFNGEVDEY LDLVDCNSCG GGGDNNFNTN TTHHDEYSVV PVQQQQVQNF 240 QLGLDQFESS KPGFSYNGSI SQSVSVSSMD VGVVPESTMT YSRPPKGTID LFSGPPIQMT 300 SHFSPMDREA RVLRYREKKK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEAEVDQM 360 FSSTLITEIG YGIVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491763.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491763.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-124 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A1S2XQ14 | 0.0 | A0A1S2XQ14_CICAR; zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | XP_004491763.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-41 | CONSTANS-like 1 |
Publications ? help Back to Top | |||
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