PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 48451.7 Da PI: 9.1527 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.3e-17 | 190 | 236 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTt Ed llv++v+++G + W+ Ia++++ gR +kqc++rw ++l XP_004491750.1 190 KGQWTTNEDSLLVELVERFGLKKWSQIAKYLN-GRIGKQCRERWCNHL 236 799*****************************.*************96 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.2e-18 | 242 | 284 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eEd+ l++a+k G++ W+ Ia++++ gRt++++k++w+ XP_004491750.1 242 KESWSEEEDKTLIEAHKTVGNK-WAEIAKRLP-GRTENSIKNHWN 284 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.063 | 185 | 240 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-31 | 187 | 283 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 189 | 238 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 191 | 240 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-12 | 193 | 236 | No hit | No description |
Pfam | PF13921 | 4.7E-18 | 193 | 253 | No hit | No description |
SMART | SM00717 | 2.4E-17 | 241 | 289 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.728 | 241 | 291 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 241 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.41E-13 | 244 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MELDPCFGEK LSMNFPKTPS IKSEMVPSSV VSPPPPPPSH YTTFLYQNHH FKKHHPLNNH 60 PGFATRVPSS SSMISMIPTP SYQRDFVDAR NPMTFEPNME LPTMHGRLNS SKGIWDLSND 120 KNNLFQSQVG VGPTLSAPSL LYGDGAIKPK LQGGDSSCTH GRIGNKPRVN DRGRIQMNSE 180 IQHKDPNKIK GQWTTNEDSL LVELVERFGL KKWSQIAKYL NGRIGKQCRE RWCNHLRPNI 240 KKESWSEEED KTLIEAHKTV GNKWAEIAKR LPGRTENSIK NHWNATKRRQ YAKKRHNRRN 300 SSKGMLLQKY IMEVAAAEEV KKELMKQSMN MMNIGNQPNN ITNANFGEYE SSDQSDFSSD 360 QGWGTNPEDD ELGGGGYVPM MFNDDGMGSG SGGTMSYDQF GSYGMENIIS EVSMKKEIDL 420 MEMIYRNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-44 | 186 | 290 | 3 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491750.1 | 0.0 | transcription factor MYB98 | ||||
TrEMBL | A0A1S2XMU3 | 0.0 | A0A1S2XMU3_CICAR; transcription factor MYB98 | ||||
STRING | XP_004491750.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-57 | myb domain protein 98 |