PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GRAS | ||||||||
Protein Properties | Length: 549aa MW: 61831.8 Da PI: 6.2914 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 453.8 | 1.1e-138 | 179 | 549 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L+ cA+a++++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl+ s+s++yk+l+++e + s+e l+++++++ev+P++kf++ XP_004491586.1 179 LKHILTVCAKAIADNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSASGSSIYKSLRCKEPE---SAELLSYMNILYEVCPYFKFGY 270 6799*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +++rL+k+A++++vpfef++ +a + d XP_004491586.1 271 MSANGAIAEAMKYEQRVHIIDFQIAQGSQWISLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVEKRLSKLAQHFKVPFEFHA-AAISGCD 364 ******************************************************998899999************************.88899** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++l++L v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+++yy+a+f+s++++lpre++eri XP_004491586.1 365 VQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYAAMFESIDVTLPREHKERI 459 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGFkp+pls+ ++ ++k ll++++++ yr++e++g+l+lgW++r Lv+ +aW+ XP_004491586.1 460 NVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFKPYPLSSLVNGTIKKLLENYSDK-YRLQEKDGALYLGWMNRDLVASCAWK 549 **************************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.938 | 153 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-136 | 179 | 549 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MQASEQHRSS SMYYQPLQEI ESYCLPQYRN LNHQMYYNDG GGHGTQFSTQ SSSDLYCTLE 60 SSSAAGSFAV YNSPSTVSFS PNDSPMSQQD SQTQSYPHDQ YHSPDNNIYS SPRSGSCITE 120 DLSSFKHKLR ELENVMLGPD SDYNLVDSYD SAMSNGNDFV SLEMDSWRQT MVAISSKNLK 180 HILTVCAKAI ADNDLLMAQW LMDELRQMVS VSGEPIQRLG AYMLEGLVAR LSASGSSIYK 240 SLRCKEPESA ELLSYMNILY EVCPYFKFGY MSANGAIAEA MKYEQRVHII DFQIAQGSQW 300 ISLIQAFAAR PGGPPHIRIT GIDDSTSAYA RGGGLHIVEK RLSKLAQHFK VPFEFHAAAI 360 SGCDVQLHNL GVRPGEALAV NFAFMLHHMP DESVSTQNHR DRLLRLVKSL SPKVVTLVEQ 420 ESNTNTAAFF PRFLETMDYY AAMFESIDVT LPREHKERIN VEQHCLARDL VNIIACEGVE 480 RVERHEVLGK WRSRFAMAGF KPYPLSSLVN GTIKKLLENY SDKYRLQEKD GALYLGWMNR 540 DLVASCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-59 | 186 | 548 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-59 | 186 | 548 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491586.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR955006 | 0.0 | CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491586.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_004491587.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1S2XMG0 | 0.0 | A0A1S2XMG0_CICAR; scarecrow-like transcription factor PAT1 | ||||
STRING | XP_004491586.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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