PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491478.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 549aa MW: 62412.7 Da PI: 5.1131

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	429.4	2.8e-131	175	549	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 l+e L++cA+a++++d+e +++l+++ls+++s +g+p+qRl ay++eAL a+la+s+s++yk+l+++e +++ s+e l+ +++++e++P+lkf+ XP_004491478.1 175 LKEMLFTCAKAIEANDMEITEWLMSELSKMVSVSGNPIQRLGAYMLEALVAKLASSGSTIYKSLKCKEPVTTTsSKELLSHMHALYEICPYLKFG 269 5789************************************************************999877757777888899******* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 ++ aN I ea+++e++vHiiDf+i+qG+QW++L+qaLa +p+g+p++RiTg+++++s + l +g+rL+k+A++ +v fef++ + + + XP_004491478.1 270 YMSANGVIAEALKNESEVHIIDFQINQGIQWISLIQALAGKPGGSPKIRITGFDDSTSAyaRGGGLDVVGKRLSKLAQSYNVVFEFHA-IKADPT 363 ***************************************************998899999********************.688899 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++le++++++ Ea+aVn++++lh+++de+v+ ++rd++++lvk+lsPkvv++veqe+++n+ sF+ rf+e+++yy a+f+s+++ lpre++er XP_004491478.1 364 EVKLEDFELRHSEAIAVNFAMMLHHVPDENVHGWNHRDRLVRLVKRLSPKVVTLVEQESNTNNLSFFPRFVETMNYYLAVFESIDVALPREHRER 458 9****************************************************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+vE+++l+re+vn+vaceg+er+erhe l+kWr+ +++aGF+++pls++++++++ ll+ +++ y++ee++g+l+lgW++++L++ SaWr XP_004491478.1 459 INVEQHCLAREVVNLVACEGSERVERHELLKKWRSCFTMAGFTSYPLSSFINCSIRNLLESYQGL-YTLEEKDGALYLGWMNQALITSSAWR 549 ***********************************************************44.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.922	149	530	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.8E-129	175	549	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MQTSHIHKMS YDSDRFSIDP IQNLESYSFM PNEILENYSS SDNSSHSILT YPSFHVLEQH 60 STLESSMDKN SPSSFSFSPN NSPVSNLHSN SYAFRSQSSL EIINDSLENE SCLMHNQDDL 120 WHKIRELENA MLGHDDADML DIYDDTVIIQ EECDPILLEA EKWNKMMEMV SRGDLKEMLF 180 TCAKAIEAND MEITEWLMSE LSKMVSVSGN PIQRLGAYML EALVAKLASS GSTIYKSLKC 240 KEPVTTTSSK ELLSHMHALY EICPYLKFGY MSANGVIAEA LKNESEVHII DFQINQGIQW 300 ISLIQALAGK PGGSPKIRIT GFDDSTSAYA RGGGLDVVGK RLSKLAQSYN VVFEFHAIKA 360 DPTEVKLEDF ELRHSEAIAV NFAMMLHHVP DENVHGWNHR DRLVRLVKRL SPKVVTLVEQ 420 ESNTNNLSFF PRFVETMNYY LAVFESIDVA LPREHRERIN VEQHCLAREV VNLVACEGSE 480 RVERHELLKK WRSCFTMAGF TSYPLSSFIN CSIRNLLESY QGLYTLEEKD GALYLGWMNQ 540 ALITSSAWR

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MQTSHIHKMS YDSDRFSIDP IQNLESYSFM PNEILENYSS SDNSSHSILT YPSFHVLEQH  60
STLESSMDKN SPSSFSFSPN NSPVSNLHSN SYAFRSQSSL EIINDSLENE SCLMHNQDDL  120
WHKIRELENA MLGHDDADML DIYDDTVIIQ EECDPILLEA EKWNKMMEMV SRGDLKEMLF  180
TCAKAIEAND MEITEWLMSE LSKMVSVSGN PIQRLGAYML EALVAKLASS GSTIYKSLKC  240
KEPVTTTSSK ELLSHMHALY EICPYLKFGY MSANGVIAEA LKNESEVHII DFQINQGIQW  300
ISLIQALAGK PGGSPKIRIT GFDDSTSAYA RGGGLDVVGK RLSKLAQSYN VVFEFHAIKA  360
DPTEVKLEDF ELRHSEAIAV NFAMMLHHVP DENVHGWNHR DRLVRLVKRL SPKVVTLVEQ  420
ESNTNNLSFF PRFVETMNYY LAVFESIDVA LPREHRERIN VEQHCLAREV VNLVACEGSE  480
RVERHELLKK WRSCFTMAGF TSYPLSSFIN CSIRNLLESY QGLYTLEEKD GALYLGWMNQ  540
ALITSSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-59	179	549	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491478.1	0.0	scarecrow-like protein 21
Refseq	XP_012568732.1	0.0	scarecrow-like protein 21
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A1S3DZ05	0.0	A0A1S3DZ05_CICAR; scarecrow-like protein 21
STRING	XP_004491476.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1653	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]