PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 35448.1 Da PI: 5.776 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+t+Ede+l+ +vk++G g+W+++++ g+ R++k+c+ rw+++l XP_004491297.1 16 KGQWSTQEDEILAAYVKEHGEGNWNLVSKNCGLARCGKSCRFRWLNHL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.5 | 4.6e-11 | 69 | 111 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ + eE ++++++ lG++ W++ a +++ gRt++++k++w+ XP_004491297.1 69 RGPLSIEEKQKIIRLYDTLGPK-WSKMAIELP-GRTDNEIKNFWN 111 678889**************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 9 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.701 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-26 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.34E-10 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-18 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-9 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.937 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.28E-7 | 75 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEQDKVNESD TNGLKKGQWS TQEDEILAAY VKEHGEGNWN LVSKNCGLAR CGKSCRFRWL 60 NHLKSDLKRG PLSIEEKQKI IRLYDTLGPK WSKMAIELPG RTDNEIKNFW NIRKRKREKE 120 GLPPLYHRSI KHEDENNSKF QDSFHNVPNM VQNNVDNTSI SNNISPTLIK RGEIEIPYMK 180 LEMISELPPL PPSLEIQNFE YPLFSNTMSN YEYTTYSPPT LMETQYEMSQ PISPRSNGML 240 ESIFYNPNIL EDSQIKLIDE EGKNPISLEK DVEANYGLLK NDTNKIPNDI KDTLYAIIYG 300 KGIPGFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 14 | 111 | 5 | 101 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | RKRKREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491297.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491297.1 | 0.0 | transcription factor WER-like | ||||
TrEMBL | A0A1S2XN78 | 0.0 | A0A1S2XN78_CICAR; transcription factor WER-like | ||||
STRING | XP_004491297.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15637 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-49 | myb domain protein 101 |