PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491297.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 307aa    MW: 35448.1 Da    PI: 5.776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+t+Ede+l+ +vk++G g+W+++++  g+ R++k+c+ rw+++l
   XP_004491297.1 16 KGQWSTQEDEILAAYVKEHGEGNWNLVSKNCGLARCGKSCRFRWLNHL 63
                     799*******************************************97 PP

2Myb_DNA-binding34.54.6e-1169111145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+ + eE ++++++   lG++ W++ a +++ gRt++++k++w+
   XP_004491297.1  69 RGPLSIEEKQKIIRLYDTLGPK-WSKMAIELP-GRTDNEIKNFWN 111
                      678889**************99.*********.***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20965IPR009057Homeodomain-like
PROSITE profilePS5129421.7011167IPR017930Myb domain
SuperFamilySSF466891.48E-2613110IPR009057Homeodomain-like
SMARTSM007175.0E-121565IPR001005SANT/Myb domain
PfamPF002491.3E-151663IPR001005SANT/Myb domain
CDDcd001674.34E-101963No hitNo description
Gene3DG3DSA:1.10.10.604.8E-1866116IPR009057Homeodomain-like
SMARTSM007179.8E-968116IPR001005SANT/Myb domain
PROSITE profilePS5129414.93768118IPR017930Myb domain
PfamPF002498.3E-1069111IPR001005SANT/Myb domain
CDDcd001674.28E-775111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEQDKVNESD TNGLKKGQWS TQEDEILAAY VKEHGEGNWN LVSKNCGLAR CGKSCRFRWL  60
NHLKSDLKRG PLSIEEKQKI IRLYDTLGPK WSKMAIELPG RTDNEIKNFW NIRKRKREKE  120
GLPPLYHRSI KHEDENNSKF QDSFHNVPNM VQNNVDNTSI SNNISPTLIK RGEIEIPYMK  180
LEMISELPPL PPSLEIQNFE YPLFSNTMSN YEYTTYSPPT LMETQYEMSQ PISPRSNGML  240
ESIFYNPNIL EDSQIKLIDE EGKNPISLEK DVEANYGLLK NDTNKIPNDI KDTLYAIIYG  300
KGIPGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19141115101B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RKRKREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491297.10.0transcription factor WER-like
TrEMBLA0A1S2XN780.0A0A1S2XN78_CICAR; transcription factor WER-like
STRINGXP_004491297.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15637211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-49myb domain protein 101