PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491091.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 46258 Da PI: 8.0332 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3.1e-10 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ XP_004491091.1 48 PGEPDCLYYLRTGMCGYGSNCRYNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.5 | 3.8e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_004491091.1 92 QPDCEYFLKTGTCKYGSTCKYHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 38.1 | 2.6e-12 | 139 | 161 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ XP_004491091.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161 6********************97 PP | |||||||
4 | zf-CCCH | 39.9 | 6.8e-13 | 274 | 299 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f+ tGtCkyG+ CkF+H++ XP_004491091.1 274 DQPECKYFMSTGTCKYGSDCKFHHPK 299 689*********************96 PP | |||||||
5 | zf-CCCH | 32.1 | 2e-10 | 319 | 342 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++++ +G Ck+G++CkF H+ XP_004491091.1 319 NAICSYYRLYGVCKFGPTCKFDHP 342 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.939 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-7 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 52 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-10 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-5 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-6 | 133 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 138 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 139 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.586 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-11 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-7 | 276 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-6 | 278 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.122 | 316 | 344 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 316 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 317 | 343 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-8 | 320 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 321 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MPENRQVLKN AASNPSGDNI EDAIRRLKIN DNRDRDVTAQ SLPFPDRPGE PDCLYYLRTG 60 MCGYGSNCRY NHPANVSLVT QYGEELPERH GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG 120 AAPVIFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QQQASFGAYP VAGSPPSTTI 180 TSSGFPYAGG FPAWSVPRMS SYLSGQGIQS YVPPFLPSSQ GIMPALSWSN YMGSMSPAIP 240 TSFLGSNLVY DYMNPGETLS GGQVMSSTLP DRPDQPECKY FMSTGTCKYG SDCKFHHPKE 300 RIGQSLLVNP LGLPMRPGNA ICSYYRLYGV CKFGPTCKFD HPVLAIPQNY GLPSPAISVF 360 DASLLNSPRR VSTVQPTETP PSKLSSDKLQ QSDTKAATED SSKQGDDTAS NSRTPSSESL 420 QE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491091.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491091.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A1S2XLE0 | 0.0 | A0A1S2XLE0_CICAR; zinc finger CCCH domain-containing protein 3 | ||||
STRING | XP_004491091.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-112 | C3H family protein |