PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004491024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28825.3 Da PI: 7.5045 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed lv++v+++G+++W+ I++ ++ gR++k+c++rw + XP_004491024.1 20 KGSWSPQEDATLVKLVTEHGPRNWSVISNGIP-GRSGKSCRLRWCNQ 65 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.5e-17 | 74 | 116 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+++++a++ +G++ W+tI+r ++ gRt++ +k++w++ XP_004491024.1 74 PFSPSEDKIIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 116 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.289 | 15 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-29 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-15 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 20 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-24 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-14 | 22 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.18 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.95E-13 | 74 | 117 | No hit | No description |
Pfam | PF00249 | 6.4E-15 | 74 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MMIGANSNSS SGDDNGDKVK GSWSPQEDAT LVKLVTEHGP RNWSVISNGI PGRSGKSCRL 60 RWCNQLSPDV QHRPFSPSED KIIIKAHAIH GNKWATISRL LPGRTDNAIK NHWNSTLRRQ 120 HMEVPIIPSS VGIGKRPPNA YDGYNSLLDL RCPYKRPCLE NNSSRDGEET VTEEEDAGNN 180 VTVTTSLSLF PPGEKFMKEE ENKKEEIFEA NGNVFGNDCL KSIIQRMIAE EVRNYVDNMR 240 RDGFQLGTGL APDSTFRK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-37 | 19 | 120 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 8e-37 | 15 | 120 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-37 | 15 | 120 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-37 | 19 | 120 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-37 | 19 | 120 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004491024.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491024.1 | 0.0 | transcription factor MYB44-like | ||||
TrEMBL | A0A1S2XMN2 | 0.0 | A0A1S2XMN2_CICAR; transcription factor MYB44-like | ||||
STRING | XP_004491024.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-51 | myb domain protein 73 |