PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 27518.7 Da PI: 9.9169 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H XP_004490914.1 62 YSCNFCKREFRSAQALGGHMNIH 84 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.07E-6 | 59 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 60 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.177 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-6 | 62 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.008 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEGYHSDQYW FWMKRRQILT SNLQLQASNG NNNKNNSWEE RAFAEDAARN ILNGSIWPPR 60 SYSCNFCKRE FRSAQALGGH MNIHRRDRAR LKQNHDQESL FDHHHQKKNI NNDFGNHYFS 120 SKIMSSHIDS YNHYQIIKPC STRRRSISPS RMISSSSSSL HNDCVETSLS LGLTSMFGQK 180 TSSSNVVPCE EKVKRLKTTN NISSLHSVFF KTCSNDHHHG MEDLDLELRL GKQQKVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 57 | 84 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 57 | 84 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR954191 | 4e-57 | CR954191.3 Medicago truncatula chromosome 5 clone mte1-26e13, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616466.2 | 3e-84 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | G7KGU7 | 8e-83 | G7KGU7_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | XP_004490914.1 | 1e-178 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 6e-28 | zinc-finger protein 10 |