PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24902.3 Da PI: 8.1579 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W +I++ g+ R++k+c++rw++yl XP_004490862.1 13 KGSWSKQEDQKLIDYIRVHGEGCWGSIPKAAGLQRCGKSCRLRWLNYL 60 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 67 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ XP_004490862.1 67 GIFAQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSH 110 66779****************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.89 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.59E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.011 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-10 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRKPCCDKEN INKGSWSKQE DQKLIDYIRV HGEGCWGSIP KAAGLQRCGK SCRLRWLNYL 60 RPDIKRGIFA QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH IRRKLIKMGI 120 DPNNHKLHQG FPRPCHVFGA GTSSCDESMN KDHKLSFTKE FEDDQETTII INNSSSSLNL 180 DLTIALPSPN RVVVVDDKTI PNCDESRTTR DMDIDLNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490862.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT699109 | 1e-155 | KT699109.1 Trifolium repens MYB134 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490862.1 | 1e-162 | transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 7e-71 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A1S2XKT4 | 1e-161 | A0A1S2XKT4_CICAR; transcription factor MYB3-like | ||||
STRING | XP_004490862.1 | 1e-161 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-73 | myb domain protein 3 |