PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 504aa MW: 55425.7 Da PI: 7.1044 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.1e-23 | 112 | 211 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +k+l++sd+++ g +++p+++a++ + ++++ ++l ++d +g++W++++++r++++r+++t+GW+ Fv+ ++L +gD+vvF+ ++s++ XP_004490828.1 112 VKILSQSDANNGGAFSVPRSCADTVfpklnfEAVPPS-QELFITDVHGEVWKFTHTFRGNPRRHLFTTGWSTFVNKKKLVAGDSVVFM--KNSTG 203 5899******************999****99767655.69************************************************..779** PP ..EEEEE- CS B3 91 elvvkvfr 98 e +v+++r XP_004490828.1 204 EIFVGIRR 211 ******97 PP | |||||||
2 | Auxin_resp | 56 | 1.7e-19 | 250 | 328 | 1 | 76 |
Auxin_resp 1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafete.dsserrl.sGtvvgvsdldpvrWpn 76 aa++a++k++FevvY+P+ ++ +Fvv ++ v +a+k+ +s GmR+k+ +e++ dss+ +l Gt++ vs++ p r + XP_004490828.1 250 AAESAEKKNAFEVVYYPSDgCWCDFVVDAKVVDEAMKIDWSCGMRVKLCLENDrDSSKMKLiLGTISNVSTATPWRMLQ 328 78999************98369*****************************98688888888*********99966555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-32 | 102 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-25 | 107 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-16 | 111 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 111 | 213 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.95E-19 | 112 | 211 | No hit | No description |
Pfam | PF02362 | 1.8E-20 | 112 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-15 | 250 | 331 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MSPTHPRRVH SNILLGCTGA SVKIPKLHSQ VYYFPLGHLH HASPSPTTHT LSILNRHRSI 60 IPCLVSTVDL LADTHSDEVF AKLLLTPVTT FRLQEPQDHS VSDDADKVVS SVKILSQSDA 120 NNGGAFSVPR SCADTVFPKL NFEAVPPSQE LFITDVHGEV WKFTHTFRGN PRRHLFTTGW 180 STFVNKKKLV AGDSVVFMKN STGEIFVGIR RIMKFEATSA AEVSEENKEF EGFLRNGKRG 240 KVTEQAVREA AESAEKKNAF EVVYYPSDGC WCDFVVDAKV VDEAMKIDWS CGMRVKLCLE 300 NDRDSSKMKL ILGTISNVST ATPWRMLQVN WDGAEVSENL KQVSPWQVEV ISQMPALHLA 360 FPPTKKFRAT HNSSGIEGST TIQFLCSTAK SSNRTPLNYD TLDASIKGVR QNLLSVSDKG 420 NSFIGVNSVA GLSIVSTELT LHSSISTNDS SSDTNISIDT KKATSPSIML FGTIIQPVQC 480 DFQDSGIKTS DDEIQDIHKA CTNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-51 | 9 | 349 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490828.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490828.1 | 0.0 | auxin response factor 17 | ||||
TrEMBL | A0A1S2XKQ4 | 0.0 | A0A1S2XKQ4_CICAR; Auxin response factor | ||||
STRING | XP_004490828.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4030 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-109 | auxin response factor 17 |