PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 833aa MW: 92562.9 Da PI: 6.3035 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.3e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_004490754.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDTEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_004490754.1 219 KNQLLLGIRRA 229 9999****997 PP | |||||||
2 | Auxin_resp | 119.4 | 2.9e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++++sd+dp rWpnS+Wrs+k XP_004490754.1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPARWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-42 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.28E-21 | 127 | 228 | No hit | No description |
Pfam | PF02362 | 7.8E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-34 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-7 | 700 | 791 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.27E-6 | 705 | 781 | No hit | No description |
PROSITE profile | PS51745 | 22.472 | 707 | 791 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence Send to blast |
MKLSTSGMSQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR 60 EIDGQIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP 120 SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDTEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITSI SDMDPARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSLF PLRLKRPWHP GTSSFLDGRD EGLMWLRGGP GDHGLNSLNF QGAGLLPWMQ 420 QRLGPTLLGN DQNQQYQAML AAAGLQNQGN VDLLRQQMMN FQQPFNYLQQ SGNLSPLQLQ 480 QQQAIQQSLS TNILQPQGQV LAHNNRENQT QQAQQQQHSY QDSVLIQGDP LHQRQHSSLP 540 SPSYSKPDYL DTGMKFSASV SPSQNMLGSL CSEGSGNLLN LSRSGHSMLN EQLPQQSWAS 600 KYSPSQVNAI GNSSMSHMQY SGRDTAMVPP HCNSDSQNSI LFGVNIDSSG LLLPTTVPRY 660 TTASADTDAS TMPLGESGFQ GSPYPCMQDS SELLQSAGQI DNQNQTPTFV KVYKVGSVGR 720 SLDISRFNSY HELWEELAQM FGIEGKFEDP LRSGWQLVFV DRENDVLLLG DDPWESFVNN 780 VWYIKILSPE DIQKMGEQAI ESLGPSSGQR LNNTGAESHD IVSGLPSLGS LEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 15 | 358 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490754.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490754.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A1S2XKN0 | 0.0 | A0A1S2XKN0_CICAR; Auxin response factor | ||||
STRING | XP_004490754.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |