PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 671aa MW: 73640.2 Da PI: 5.8396 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1e-06 | 262 | 282 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_004490603.1 262 PCPEFRK-GSCSKGDLCEYAHG 282 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.4E-15 | 41 | 161 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.83E-14 | 53 | 171 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 10 | 62 | 92 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.228 | 62 | 142 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 1.8E-7 | 63 | 121 | No hit | No description |
CDD | cd00204 | 3.26E-11 | 64 | 140 | No hit | No description |
SMART | SM00248 | 0.0071 | 97 | 129 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.568 | 97 | 132 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 12.887 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-4 | 290 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7 | 292 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MGYEIVNNEG LGQHHEVSSL LEFSAADDLI SFRDAVEKEG CDVDGVGLWY GRRVGSNKLG 60 YEERTPLMVA AIFGSLGVSA YILATGYVDV NRSSGSDGAT ALHCAVAGGS AASVEIIKLL 120 LDASADASAV DVNGNRPVDL IVSVANSIFN PRKRMLQALL EGIGGADWTC LTFPEEISFG 180 HVDEQQRQDV NMPRVSKDYP VDLSLPDINN GIFSTDEFRM YTFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPKMYNYTC VPCPEFRKGS CSKGDLCEYA HGIFECWLHP AQYRTRLCKD 300 ESSCTRRVCF FAHKLEELRP LYASTGSAIP SPRSYSGSAS ALEMGSLSPI ALGSPSVMIP 360 PSSTTPLTPS GASSAVAAAS MWQTQSNVSV PTLQLPKSRF NTAITAGDFD SSMAMLQVET 420 QRRRQQQLKM DEISGLSSPS NWKNSMPNSP SFQVSLSDHT EDIFGSHDPS ILHNKFHGIS 480 LDAAGLPQLQ SPTGIQMHPS MNQQQQNYSS CHSPTYRFDR SGEAAAAALN ARAAAFSKRS 540 QSFIERSVAN RYSELLSPPN PYAFSNWGSP DGKLNWAIHG EELNKLRKSS SFGFRSSSTP 600 LTTAATQAPE NDDEPDVSWV NSLVKDVTPQ ESGQYKAEYQ QRKLQYNLNN GTNAIPAWLE 660 QMYMEQEQMV H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490603.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490603.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like | ||||
Refseq | XP_027187761.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like | ||||
TrEMBL | A0A1S2XLR2 | 0.0 | A0A1S2XLR2_CICAR; zinc finger CCCH domain-containing protein 66-like | ||||
STRING | XP_004490603.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-169 | C3H family protein |