PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 297aa MW: 34166.1 Da PI: 6.9998 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 28 | 71 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT eE +l+ +a + + ++ +W+++a++++ g+t ++ + XP_004490575.1 28 KWTHEENKLFENALAVHDKDtpdRWHKVAEMIP-GKTVCDVMRQY 71 8********************************.***87776655 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3e-14 | 128 | 172 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky XP_004490575.1 128 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 172 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.883 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-7 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-11 | 27 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 27 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.90E-7 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 2.6E-7 | 28 | 72 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.348 | 121 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-17 | 123 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 124 | 176 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.3E-12 | 125 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 125 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-10 | 128 | 173 | No hit | No description |
Pfam | PF00249 | 1.1E-12 | 128 | 172 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MKWEMEILPP ESFTQNTNWC IEENMSTKWT HEENKLFENA LAVHDKDTPD RWHKVAEMIP 60 GKTVCDVMRQ YKELEVDVCN IEAGLVPVPG YNNTPTLPFT LDWVNTSGNG KRSSLVRGPE 120 HERKKGVPWT EEEHKLFLLG LKKYGKGDWR NISRNFVITR TPTQVASHAQ KYFIRQLSGG 180 KDKRRASIHD ITTVNLSETI GTSSSEDTNN RSTSPQNSML MQPTSSTTTN FHWRNNQPNV 240 MAFNHGHEQA FMAPHGVDSY EVKMEDQDFH KGTIHESSYP HNLVFQMQHS SQHYSHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-14 | 29 | 94 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490575.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490575.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-107 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S2XK47 | 0.0 | A0A1S2XK47_CICAR; transcription factor DIVARICATA-like | ||||
STRING | XP_004490575.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-87 | MYB family protein |
Publications ? help Back to Top | |||
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